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AI-designed antivenoms could help treat lethal snakebites

Nature Benjamin Thompson, Elizabeth Gibney Jan 15, 2025 DOI: 10.1038/d41586-025-00134-y

Plasma levels of anti phosphocholine IgM antibodies are negatively correlated with bone mineral density in humans

Scientific Reports Michela Palmieri, Spyridoula Maraka, Horace J. Spencer et al. Jan 15, 2025 DOI: 10.1038/s41598-025-85624-9

Abstract Phosphatidylcholine is a ubiquitous phospholipid. It contains a phosphocholine (PC) headgroup and polyunsaturated fatty acids that, when oxidized, form reactive oxidized phospholipids (PC-OxPLs). PC-OxPLs are pathogenic in multiple diseases and neutralized by anti-PC IgM antibodies. The levels of anti-PC IgM increase as the levels of PC-OxPLs increase and, in humans, are inversely correlated with the incidence of cardiovascular diseases and steatohepatitis. PC-OxPLs also decrease bone mass in mice. Overexpression of anti-PC IgM ameliorates atherosclerosis and steatohepatitis, increases bone mass in young mice, and protects against high fat diet- and age-associated osteoporosis. We investigated the relationship between anti-PC IgM plasma levels and bone mineral density (BMD) in a cross-sectional study of 247 participants [mean age: 65.5 (± 8.6) years] without medical conditions known to influence BMD or antibody production. Anti-PC IgM levels negatively correlated with both T- and Z-scores at the lumbar spine, femur and, to a lesser extent, the forearm. These correlations were maintained after adjustment for age, race, and sex. These results raise the possibility that higher levels of anti-PC IgM in patients with lower BMD reflect exposure to higher levels of PC-OxPLs, which are known to affect bone mass, and could be a novel risk marker for osteoporosis.

The impact of a humanized bile acid composition on atherosclerosis development in hypercholesterolaemic Cyp2c70 knockout mice

Scientific Reports Tess Yntema, Tim R. Eijgenraam, Niels J. Kloosterhuis et al. Jan 15, 2025 DOI: 10.1038/s41598-025-86183-9

Clinical validation of explainable AI for fetal growth scans through multi-level, cross-institutional prospective end-user evaluation

Scientific Reports Zahra Bashir, Manxi Lin, Aasa Feragen et al. Jan 15, 2025 DOI: 10.1038/s41598-025-86536-4

Astragaloside IV attenuates cadmium induced nephrotoxicity in rats by activating Nrf2

Scientific Reports Yuchen Li, Jiayi Zhou, Tianxin Zhang et al. Jan 15, 2025 DOI: 10.1038/s41598-025-86312-4

An effective feature selection approach based on hybrid Grey Wolf Optimizer and Genetic Algorithm for hyperspectral image

Scientific Reports Yiqun Shang, Minrui Zheng, Jiayang Li et al. Jan 15, 2025 DOI: 10.1038/s41598-024-84934-8

High genomic connectivity within Anatoma at hydrothermal vents along the Central and Southeast Indian Ridge

Scientific Reports Katharina Kniesz, Leon Hoffman, Pedro Martinez Arbizu et al. Jan 15, 2025 DOI: 10.1038/s41598-025-85507-z

Abstract Hydrothermal vents are ecosystems inhabited by a highly specialized fauna. To date, more than 30 gastropod species have been recorded from vent fields along the Central and Southeast Indian Ridge and all of them are assumed to be vent-endemic. During the INDEX project, 701 representatives of the genus Anatoma (Mollusca: Vetigastropoda) were sampled from six abyssal hydrothermal vent fields. Traditional morphology and COI barcoding of Hoffman et al. (Eur J Taxon 826:135–162, 2022) were combined with 2b-RAD sequencing to investigate the anatomid community structure and connectivity between the different vent fields. Consequently, 2b-RAD sequencing supported the primary species hypothesis (based on morphology) for 125 individuals of the recently described taxa A. discapex, A. declivis, A. laevapex and A. paucisculpta. We assigned 22 additional specimens to species with 2b-RAD sequencing and updated the community analyses that confirmed the pattern of expanding populations. Population structure and FST values indicated high connectivity along the six sampled vent fields for the three most abundant species. High levels of gene flow are suggested, pointing to high dispersal potential of the target species along the study area. However, low levels of heterozygosity revealed a small gene pool and therefore an increased vulnerability towards environmental change. Our results demonstrate that 2b-RAD sequencing, in combination with other molecular methods, can accurately characterise macrobenthic mollusc communities. Sequencing technology is an essential tool for ongoing monitoring. Furthermore, we highlight that the inferred molecular and ecological patterns provide valuable insights into hydrothermal vent ecosystems, which are crucial for the successful conservation of these ecosystems.

Road trip

Nature William C. Armstrong, J. W. Armstrong Jan 15, 2025 DOI: 10.1038/d41586-024-04177-5

Two-photon NAD(P)H-FLIM reveals unperturbed energy metabolism of Ascaris suum larvae, in contrast to host macrophages upon artemisinin derivatives exposure

Scientific Reports Zaneta D. Musimbi, Arkadi Kundik, Jürgen Krücken et al. Jan 15, 2025 DOI: 10.1038/s41598-025-85780-y

Abstract Soil-transmitted helminths (STH) are widespread, with Ascaris lumbricoides infecting millions globally. Malaria and STH co-infections are common in co-endemic regions. Artemisinin derivatives (ARTs)—artesunate, artemether, and dihydroartemisinin—are standard malaria treatments and are also known to influence the energy metabolism of parasites, tumors, and immune cells. Herein, we explore the potential of ARTs to influence ascariasis either by directly targeting larvae or indirectly by modifying macrophage responses. Ascaris suum third-stage larvae and porcine IL-4 polarized (M2-like) macrophages were exposed to ARTs in vitro, and their metabolism was evaluated using two-photon NAD(P)H-FLIM. Both larvae and M2-like macrophages exhibited a steady-state bioenergetic profile of high oxidative phosphorylation and low anaerobic glycolysis. In A. suum larvae, two metabolically distinct regions were identified, with particularly high DUOX activity in the pharynx compared to the midgut; however, ARTs did not alter these profiles. In contrast, exposure of M2-like macrophages to ARTs induced a metabolic shift towards high anaerobic glycolysis and reduced metabolic activity, suggesting a possible indirect effect of ARTs on the helminth infection. Overall, two-photon NAD(P)H-FLIM proved to be a powerful tool for studying specific metabolic pathways in Ascaris larvae and host macrophages, offering valuable insights into the metabolic mechanisms of drug action on both parasite and host.

Delayed onset of ocean acidification in the Gulf of Maine

Scientific Reports Joseph A. Stewart, Branwen Williams, Michèle LaVigne et al. Jan 15, 2025 DOI: 10.1038/s41598-024-84537-3

Abstract The Gulf of Maine holds significant ecological and economic value for fisheries and communities in north-eastern North America. However, there is apprehension regarding its vulnerability to the effects of increasing atmospheric CO2. Substantial recent warming and the inflow of low alkalinity waters into the Gulf of Maine have raised concerns about the impact of ocean acidification on resident marine calcifiers (e.g. oysters, clams, mussels). With limited seawater pH records, the natural variability and drivers of pH in this region remain unclear. To address this, we present coastal water pH proxy records using boron isotope (δ11B) measurements in long-lived, annually banded, crustose coralline algae (1920–2018 CE). These records indicate seawater pH was low (~ 7.9) for much of the last century. Contrary to expectation, we also find that pH has increased (+ 0.2 pH units) over the past 40 years, despite concurrent rising atmospheric CO2. This increase is attributed to an increased input of high alkalinity waters derived from the Gulf Stream. This delayed onset of ocean acidification is cause for concern. Once ocean circulation-driven buffering effects reach their limit, seawater pH decline may occur swiftly. This would profoundly harm shellfisheries and the broader Gulf of Maine ecosystem.

Gene drives development of brain’s emotional centre and its connections

Nature Jan 15, 2025 DOI: 10.1038/d41586-024-04143-1

Age-period-cohort analysis of self-harm incidence rates by gender in Iran among individuals aged 10–39 years, 1990–2019

Scientific Reports Yousef Ramazani, Alireza Abdi, Shahab Rezaeian et al. Jan 15, 2025 DOI: 10.1038/s41598-025-85861-y

A mutation makes plant roots more welcoming to beneficial microbes

Nature Jan 15, 2025 DOI: 10.1038/d41586-025-00092-5

Microstructure and magnetism of austenitic steels in relation to chemical composition, severe plastic deformation, and solution annealing

Scientific Reports Kamila Hrabovská, Ondřej Životský, Petra Váňová et al. Jan 15, 2025 DOI: 10.1038/s41598-025-86028-5

Abstract Three types of commercial austenitic stainless steels, 1.4307 (AISI 304 L), 1.4404 (AISI 316 L) 1.4845 (AISI 310 S) with different chemical compositions, are subjected to severe plastic deformation at room temperature by a unique Dual Rolling Equal Channel Extrusion (DRECE) method. Its impact is evaluated from the viewpoint of microstructure analyses, X-ray diffraction, and macroscopic magnetic properties completed by microscopic Mössbauer characteristics. The study also includes the solution annealing at 950 °C for 0.5 h to follow the recovering austenitic structure and paramagnetic state of steels with the aim to offer more information with respect to new technical applications. The results show the importance of the steel’s chemical composition and microstructure, mainly grain size, on the stability of the austenitic structure closely associated with the paramagnetic behaviour.

Reconfigured single- and double-diode models for improved modelling of solar cells/modules

Scientific Reports Emre Çelik, Mehmet Karayel, Dinçer Maden et al. Jan 15, 2025 DOI: 10.1038/s41598-025-86063-2

multistrap: boosting phylogenetic analyses with structural information

Nature Communications Athanasios Baltzis, Luisa Santus, Björn E. Langer et al. Jan 15, 2025 DOI: 10.1038/s41467-024-55264-0

Selected microwave irradiation effectively inactivates airborne avian influenza A(H5N1) virus

Scientific Reports Pietro Bia, Margherita Losardo, Antonio Manna et al. Jan 15, 2025 DOI: 10.1038/s41598-025-85376-6

Refreshable memristor via dynamic allocation of ferro-ionic phase for neural reuse

Nature Communications Jiangang Chen, Zhixing Wen, Fan Yang et al. Jan 15, 2025 DOI: 10.1038/s41467-024-55701-0

Integrating spatial clustering and multi-source geospatial data for comprehensive geological hazard modeling in Hunan Province

Scientific Reports Weifeng Xiao, Ziyuan Zhou, Bozhi Ren et al. Jan 15, 2025 DOI: 10.1038/s41598-024-84825-y

GGCX promotes Eurasian avian-like H1N1 swine influenza virus adaption to interspecies receptor binding

Nature Communications Jiahui Zou, Meijun Jiang, Rong Xiao et al. Jan 15, 2025 DOI: 10.1038/s41467-025-55903-0