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Discover research articles across all indexed journals

Construction and validation of a nomogram predictive model for assessing the risk of surgical site infections following posterior lumbar fusion surgery

Scientific Reports Jin-Zhou Luo, Jie-Zhao Lin, Qi-Fan Chen et al. Jan 06, 2025 DOI: 10.1038/s41598-024-84174-w

Rapid and quantitative functional interrogation of human enhancer variant activity in live mice

Nature Communications Ethan W. Hollingsworth, Taryn A. Liu, Joshua A. Alcantara et al. Jan 06, 2025 DOI: 10.1038/s41467-024-55500-7

Abstract Functional analysis of non-coding variants associated with congenital disorders remains challenging due to the lack of efficient in vivo models. Here we introduce dual-enSERT, a robust Cas9-based two-color fluorescent reporter system which enables rapid, quantitative comparison of enhancer allele activities in live mice in less than two weeks. We use this technology to examine and measure the gain- and loss-of-function effects of enhancer variants previously linked to limb polydactyly, autism spectrum disorder, and craniofacial malformation. By combining dual-enSERT with single-cell transcriptomics, we characterise gene expression in cells where the enhancer is normally and ectopically active, revealing candidate pathways that may lead to enhancer misregulation. Finally, we demonstrate the widespread utility of dual-enSERT by testing the effects of fifteen previously uncharacterised rare and common non-coding variants linked to neurodevelopmental disorders. In doing so we identify variants that reproducibly alter the in vivo activity of OTX2 and MIR9-2 brain enhancers, implicating them in autism. Dual-enSERT thus allows researchers to go from identifying candidate enhancer variants to analysis of comparative enhancer activity in live embryos in under two weeks.

Knockout or inhibition of DHPS suppresses ovarian tumor growth and metastasis by attenuating the TGFβ pathway

Scientific Reports Guannan Zhao, Xinxin Zhao, Ziping Liu et al. Jan 06, 2025 DOI: 10.1038/s41598-025-85466-5

Tracing ancient solar cycles with tree rings and radiocarbon in the first millennium BCE

Nature Communications Nicolas Brehm, Charlotte L. Pearson, Marcus Christl et al. Jan 06, 2025 DOI: 10.1038/s41467-024-55757-y

AbstractThe Sun drives Earth’s energy systems, influencing weather, ocean currents, and agricultural productivity. Understanding solar variability is critical, but direct observations are limited to 400 years of sunspot records. To extend this timeline, cosmic ray-produced radionuclides like 14C in tree-rings provide invaluable insights. However, few records have the resolution or temporal span required to thoroughly investigate important short-term solar phenomena, such as the 11-year solar cycle, or 14C production spikes most likely linked to solar energetic particle (SEP) events. Here we present a continuous, annually resolved atmospheric 14C record from tree-rings spanning the first millennium BCE, confirming no new SEP’s and clearly defining the 11-year solar cycle, with a mean period of 10.5 years, and amplitude of approximately 0.4‰ in 14C concentration. This dataset offers unprecedented detail on solar behavior over long timescales, providing insights for climatic research and solar hazard mitigation, while also offering enhanced radiocarbon calibration and dating accuracy.

Nanotechnology and LSTM machine learning algorithms in advanced fuel spray dynamics in CI engines with different bowl geometries

Scientific Reports Harish Venu, Manzoore Elahi M. Soudagar, Tiong Sieh Kiong et al. Jan 06, 2025 DOI: 10.1038/s41598-024-83211-y

Factors governing $${\rm H}_{3}^{+}$$ formation from methyl halogens and pseudohalogens

Nature Communications Jacob Stamm, Swati S. Priyadarsini, Shawn Sandhu et al. Jan 06, 2025 DOI: 10.1038/s41467-024-55065-5

Seepage mode in lamina-developed shale oil reservoirs under strong heterogeneous and strong fluid–solid coupling in Jiyang depression of China

Scientific Reports Chunlei Yu, Shiming Zhang, Ting Chen et al. Jan 06, 2025 DOI: 10.1038/s41598-024-84882-3

Author Correction: Thermophilic Hadarchaeota grow on long-chain alkanes in syntrophy with methanogens

Nature Communications Tiantian Yu, Lin Fu, Yinzhao Wang et al. Jan 06, 2025 DOI: 10.1038/s41467-024-55708-7

Associations of time spent on different types of digital media with self-rated general and mental health in Swedish adolescents

Scientific Reports Helena Frielingsdorf, Victoria Fomichov, Ingrid Rystedt et al. Jan 06, 2025 DOI: 10.1038/s41598-024-83951-x

AbstractAlthough previous studies have suggested an association between digital media use and health, detailed knowledge about how different types of digital media impact adolescent health is limited. This cross-sectional population-based study explored the relationship between time spent on various digital media and adolescents’ self-rated general and mental health. The study included 3566 Swedish high school students aged 16–17 years. Associations between time spent on digital media (social media, gaming, watching movies/series/video clips etc. and digital schoolwork) and self-rated health outcomes (general health, self-esteem, symptoms of worry/anxiety and low mood/depression, trust in other people, head/neck/shoulder pain and sleep quality) was assessed. Statistical analyses employed logistic regression models adjusted for covariates (sociodemographic variables and health behaviours). In the adjusted models, spending very high amounts of time (≥ 6 h/day) on any digital media, except schoolwork, was associated with poor self-esteem, symptoms of low mood/depression and poor sleep (ORs 1.35–2.93, p < 0.05). Spending six hours or more on digital media was also associated with worry/anxiety (for social media and gaming), head/neck/shoulder pain (for social media, watching movies/series/video clips and schoolwork), poor general health (for gaming and watching movies/series/video clips) and low trust (for gaming) (ORs 1.39–3.18, p < 0.05). High amounts of time (4–5 h/day) of watching movies/series/video clips was associated with daily symptoms of low mood/depression, neck/shoulder pain, and low trust in other people (ORs 1.46, 1.41, and 1.32, p < 0.05). This study indicates a dose-response relationship between digital media use and adverse health outcomes in adolescents, where adverse associations start to appear after 4–5 h, particularly for watching movies/series/video clips. However, further longitudinal studies, randomized controlled trials and public health interventions focused on healthy and balanced use of digital media are warranted.

Hierarchical representations of relative numerical magnitudes in the human frontoparietal cortex

Nature Communications Teruaki Kido, Yuko Yotsumoto, Masamichi J. Hayashi Jan 06, 2025 DOI: 10.1038/s41467-024-55599-8

Study on performance of perforated dew point indirect evaporative coolers

Scientific Reports Xuliang Liu, Chengjun Jing, Yongcai Li et al. Jan 06, 2025 DOI: 10.1038/s41598-025-85253-2

Elastic, strong and tough ionically conductive elastomers

Nature Communications Burebi Yiming, Simon Hubert, Alex Cartier et al. Jan 06, 2025 DOI: 10.1038/s41467-024-55472-8

Research on the acoustic emission characteristics and instability correlation effect of the dynamic response of waste dump slopes

Scientific Reports Shaoqiang Liu, Hongbao Zhao, Menglai Wang Jan 06, 2025 DOI: 10.1038/s41598-025-85110-2

Spatial tumor immune heterogeneity facilitates subtype co-existence and therapy response in pancreatic cancer

Nature Communications Lukas Klein, Mengyu Tu, Niklas Krebs et al. Jan 06, 2025 DOI: 10.1038/s41467-024-55330-7

AbstractPancreatic ductal adenocarcinoma (PDAC) displays a high degree of spatial subtype heterogeneity and co-existence, linked to a diverse microenvironment and worse clinical outcome. However, the underlying mechanisms remain unclear. Here, by combining preclinical models, multi-center clinical, transcriptomic, proteomic, and patient bioimaging data, we identify an interplay between neoplastic intrinsic AP1 transcription factor dichotomy and extrinsic macrophages driving subtype co-existence and an immunosuppressive microenvironment. ATAC-, ChIP-, and RNA-seq analyses reveal that JUNB/AP1- and HDAC-mediated epigenetic programs repress pro-inflammatory signatures in tumor cells, antagonizing cJUN/AP1 signaling, favoring a therapy-responsive classical neoplastic state. This dichotomous regulation is amplified via regional TNF-α+ macrophages, which associates with a reactive phenotype and reduced CD8+ T cell infiltration in patients. Consequently, combined preclinical anti-TNF-α immunotherapy and chemotherapy reduces macrophages and promotes CD3+/CD8+ T cell infiltration in basal-like PDAC, improving survival. Hence, tumor cell-intrinsic epigenetic programs, together with extrinsic microenvironmental cues, facilitate intratumoral subtype heterogeneity and disease progression.

Methylcobalamin-containing nanofiber sheets have better neuroprotective effects than small intestinal submucosa sheets

Scientific Reports Yoshiaki Yoshimura, Toru Iwahashi, Taisuke Kasuya et al. Jan 06, 2025 DOI: 10.1038/s41598-024-78933-y

Tumor microenvironment-responsive engineered hybrid nanomedicine for photodynamic-immunotherapy via multi-pronged amplification of reactive oxygen species

Nature Communications Jinglin Zou, Cong Jiang, Qiangsheng Hu et al. Jan 06, 2025 DOI: 10.1038/s41467-024-55658-0

GYY4137 ameliorates blood brain barrier damage by inhibiting autophagy mediated occludin degradation in cardiac arrest and resuscitation

Scientific Reports Pengyu Duan, Xiaoyan Li, Yonghong Bi et al. Jan 06, 2025 DOI: 10.1038/s41598-024-84948-2

Swarm navigation of cyborg-insects in unknown obstructed soft terrain

Nature Communications Yang Bai, Phuoc Thanh Tran Ngoc, Huu Duoc Nguyen et al. Jan 06, 2025 DOI: 10.1038/s41467-024-55197-8

Investigation of mechanical behavior of slag-stabilized rammed earth reinforced by carpet polyacrylic yarn waste

Scientific Reports Amirhossein Naseri, Omid Ghasemi, Seyed Mohammad Fattahi et al. Jan 06, 2025 DOI: 10.1038/s41598-024-84722-4

Anti-aliased metasurfaces beyond the Nyquist limit

Nature Communications Seokwoo Kim, Joohoon Kim, Kyungtae Kim et al. Jan 06, 2025 DOI: 10.1038/s41467-024-55095-z