Browse Articles

Discover research articles across all indexed journals

Selective photoelectrochemical synthesis of adipic acid using single-atom Ir decorated α-Fe2O3 photoanode

Nature Communications Shenghe Si, Yuyin Mao, Ying-Ao Liu et al. Jun 02, 2025 DOI: 10.1038/s41467-025-60506-w

Electronic strong coupling modifies the ground-state intermolecular interactions in self-assembled chlorin molecules

Nature Communications Subha Biswas, Mainak Mondal, Gokul Chandrasekharan et al. Jun 02, 2025 DOI: 10.1038/s41467-025-60025-8

Metabolic modeling reveals a multi-level deregulation of host-microbiome metabolic networks in IBD

Nature Communications Jan Taubenheim, A. Samer Kadibalban, Johannes Zimmermann et al. Jun 02, 2025 DOI: 10.1038/s41467-025-60233-2

Abstract Inflammatory bowel diseases (IBDs) are chronic disorders involving dysregulated immune responses. Despite the role of disrupted host-microbial interaction in the pathophysiology of IBD, the underlying metabolic principles are not fully understood. We densely profiled microbiome, transcriptome and metabolome signatures from longitudinal IBD cohorts before and after advanced drug therapy initiation and reconstructed metabolic models of the gut microbiome and the host intestine to study host-microbiome metabolic cross-talk in the context of inflammation. Here, we identified concomitant changes in metabolic activity across data layers involving NAD, amino acid, one-carbon and phospholipid metabolism. In particular on the host level, elevated tryptophan catabolism depleted circulating tryptophan, thereby impairing NAD biosynthesis. Reduced host transamination reactions disrupted nitrogen homeostasis and polyamine/glutathione metabolism. The suppressed one-carbon cycle in patient tissues altered phospholipid profiles due to limited choline availability. Simultaneously, microbiome metabolic shifts in NAD, amino acid and polyamine metabolism exacerbated these host metabolic imbalances. Leveraging host and microbe metabolic models, we predicted dietary interventions remodeling the microbiome to restore metabolic homeostasis, suggesting novel therapeutic strategies for IBD.

Use of de-epithelialized free perforator flaps for simultaneous bone and soft-tissue reconstruction in chronic calcaneus osteomyelitis

Scientific Reports Bo Young Park Jun 02, 2025 DOI: 10.1038/s41598-025-04007-2

The role of human Shu complex in ATP-dependent regulation of RAD51 filaments during homologous recombination–associated DNA damage response

Journal of Biological Chemistry Sam S.H. Chu, Guangxin Xing, Hong Ling Jun 01, 2025 DOI: 10.1016/j.jbc.2025.110212

Nrf2-and p53-inducible REDD2/DDiT4L/Rtp801L confers pancreatic β-cell dysfunction, leading to glucose intolerance in high-fat diet-fed mice

Journal of Biological Chemistry Yukiho Yamada, Natsuho Urakawa, Hisato Tamiya et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.110271

Bile acids inhibit equilibrative adenosine transport to alter adenosine receptor signaling in cholestasis

Journal of Biological Chemistry Arnav Joshi, Sijie Chen, Fazlur Md Rahman et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.108563

Conditional lethality and suppressor analysis of plasmid-based temperature-sensitive fabZ expression in Pseudomonas aeruginosa

Journal of Biological Chemistry Zhenhua Chen, Junpeng Lu, Qinghai Tang et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.108553

Smooth muscle Cxcl12 contributions to vascular remodeling in flow and hypoxia-induced pulmonary hypertension

Journal of Biological Chemistry Timothy Klouda, Savas T. Tsikis, Thomas I. Hirsch et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.110207

NOTCH2 disrupts the synovial fibroblast identity and the inflammatory response of epiphyseal chondrocytes

Journal of Biological Chemistry Ernesto Canalis, Rosa Guzzo, Lauren Schilling et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.110206

The transcriptional regulator Sin3a activates CD44 and promotes collective luminal breast cancer cell migration

Journal of Biological Chemistry Yaqi Qiu, Guangxin Luan, Yiwen Liu et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.110264

CRAC channel activity pulsates during cytosolic Ca2+ oscillations

Journal of Biological Chemistry Yu-Ping Lin, Erica Scappini, Gary R. Mirams et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.108519

High uric acid exacerbates nonalcoholic steatohepatitis through NLRP3 inflammasome and gasdermin D-mediated pyroptosis

Journal of Biological Chemistry Zixin Xu, Chenxi Tang, Xin Song et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.110249

The ribonuclease RNase T2 mediates selective autophagy of ribosomes induced by starvation in Saccharomyces cerevisiae

Journal of Biological Chemistry Atsushi Minami, Kohei Nishi, Rikusui Yamada et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.108554

ProOvErlap: Assessing feature proximity/overlap and testing statistical significance from genomic intervals

Journal of Biological Chemistry Nicolò Gualandi, Alessio Bertozzo, Claudio Brancolini Jun 01, 2025 DOI: 10.1016/j.jbc.2025.110209

Evidence of bidirectional transmembrane signaling by the sensor histidine kinase GacS from Pseudomonas aeruginosa

Journal of Biological Chemistry Safoura Salar, Steve Silletti, Florian D. Schubot Jun 01, 2025 DOI: 10.1016/j.jbc.2025.108521

A SUMO-interacting motif in the guanine nucleotide exchange factor EPAC1 is required for subcellular targeting and function

Journal of Biological Chemistry Wenli Yang, Fang Mei, Wei Lin et al. Jun 01, 2025 DOI: 10.1016/j.jbc.2025.110279

Circadian clock-independent ultradian rhythms in lipid metabolism in the Drosophila fat body

Journal of Biological Chemistry Blanca Lago Solis, Rafael Koch, Emi Nagoshi Jun 01, 2025 DOI: 10.1016/j.jbc.2025.110245

An uncharacterized gene from the Actinobacillus genus encodes a glucosyltransferase with successive transfer activity and unique substrate specificity

Journal of Biological Chemistry Takahiro Yamasaki, Daisuke Kohda Jun 01, 2025 DOI: 10.1016/j.jbc.2025.108567

Histone H1 deamidation regulates DNA double-strand break repair

Nature Reviews Molecular Cell Biology Caroline Barranco Jun 01, 2025 DOI: 10.1038/s41580-025-00860-1