Browse Articles

Combined loss of brevican, neurocan, tenascin-C and tenascin-R leads to impaired fear retrieval due to perineuronal net loss

Abstract In conditions such as neurodegenerative diseases, posttraumatic stress disorder (PTSD), addiction and spinal cord injuries, restricted synaptic plasticity hinders the formation of new neuronal connections, preventing the compensation and treatment of adverse behaviors. Perineuronal nets (PNNs) significantly restrict synaptic plasticity by inhibiting synapse formation. The digestion of PNNs has been associated with short-term cognitive improvements and reduced long-term memory, offering potential therapeutic benefits in PTSD. This study investigates the correlation between PNNs and fear memory processes in extracellular matrix (ECM) mutant mice, particularly focusing on the amygdala-medial prefrontal cortex (mPFC) circuit, which is crucial for fear memory generation and maintenance. Fear conditioning was conducted on mice lacking four key ECM-molecules: brevican, neurocan, tenascin-C and tenascin-R (4x KO). These mice exhibited severe impairments in memory consolidation, as evident by their inability to retrieve previously learned fear memories, coupled with reduced PNN density and disturbed synaptic integrity along their PNNs. Additionally, changes in neural activity in the basolateral amygdala (BL) and reductions in VGAT+ synaptic puncta in the amygdala-mPFC circuit were observed. In contrast, tenascin single KOs showed intact fear behavior and memory compared to their control groups. Impaired fear memory consolidation can be advantageous in certain conditions, such as PTSD, making the 4x KO mice an intriguing model for future fear conditioning studies and highlighting brevican, neurocan, Tnc, and Tnr as compelling targets for further investigation. This study underscores the significance of ECM regulation for synaptic organization and the potential of PNN modulation as a therapeutic target for fear memory-related conditions.

Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site

The North Railroad Avenue Plume (NRAP) Superfund site in New Mexico, USA exemplifies successful chlorinated solvent bioremediation. NRAP was the result of leakage from a dry-cleaning that operated for 37 years. The presence of tetrachloroethene biodegradation byproducts, organohalide respiring genera (OHRG), and reductive dehalogenase (rdh) genes detected in groundwater samples indicated that enhanced reductive dechlorination (ERD) was the remedy of choice. This was achieved through biostimulation by mixing emulsified vegetable oil into the contaminated aquifer. This report combines metagenomic techniques with site monitoring metadata to reveal new details of ERD. DNA extracts from groundwater samples collected prior to and at four, 23 and 39 months after remedy implementation were subjected to whole metagenome sequencing (WMS) and 16S rRNA gene amplicon (16S) analyses. The response of the indigenous NRAP microbiome to ERD protocols is consistent with results obtained from microcosms, dechlorinating consortia, and observations at other contaminated sites. WMS detects three times as many phyla and six times as many genera as 16S. Both techniques reveal abundance changes in Dehalococcoides and Dehalobacter that reflect organohalide form and availability. Methane was not detected before biostimulation but appeared afterwards, corresponding to an increase in methanogenic Archaea. Assembly of WMS reads produced scaffolds containing rdh genes from Dehalococcoides, Dehalobacter, Dehalogenimonas, Desulfocarbo, and Desulfobacula. Anaerobic and aerobic cometabolic organohalide degrading microbes that increase in abundance include methanogenic Archaea, methanotrophs, Dechloromonas, and Xanthobacter, some of which contain hydrolytic dehalogenase genes. Aerobic cometabolism may be supported by oxygen gradients existing in aquifer microenvironments or by microbes that produce O2 via microbial dismutation. The NRAP model for successful ERD is consistent with the established pathway and identifies new taxa and processes that support this syntrophic process. This project explores the potential of metagenomic tools (MGT) as the next advancement in bioremediation.

The epidemiological study of family-based Helicobacter pylori screening and its benefits: a cross-sectional study

A subnational socioeconomic assessment of family planning levels, projections, and disparities among married women of reproductive age in Cameroon

Background Local-level socioeconomic gradients significantly influence access to reproductive health services in developing countries. This study examines disparities in family planning use among married women of reproductive age across Cameroon’s subnational territories, highlighting inequities often overlooked in national analyses. Furthermore, it incorporates HIV status (a key yet frequently omitted covariate) into the assessment of family planning determinants. Methods A Bayesian hierarchical model incorporated with Cameroon Demographic and Health Survey cross-sectional data (between 1991 and 2018) was employed to generate estimates of family planning indicators per residence, wealth, and education categories within each region. Slope index of inequality was used to quantify disparities. The determinants analysis involved Bayesian logistic regression. Results Estimates for 2023 revealed that the Centre region’s urban and rural areas had the highest modern contraceptive prevalence rate overall, with 49.0% (24.9–73.8) and 28.2% (12.4–52.3), respectively. The rural Far North had the least estimate [3.9% (1.5–10.5)]. Demand satisfied with modern methods was highest among Adamawa region’s richest quintile [82.9% (58.1 to 94.4)] and higher educated [85.9% (69.5 to 94.2)], and lowest among the East region’s poorest [5.3% (1.5 to 16.5)] and Far North’s none-educated [8.6% (3.3 to 20.4)]. Unmet need for modern methods was lowest among the West region’s richest [5.1% (1.8 to 13.5)] and highest among the Littoral’s poorest [23.1% (9.4 to 47.4)]. 2030 projections show the widest wealth- and education-based gaps for demand satisfied with modern methods in the Adamawa [27.0 percentage points (%p) (2.3 to 51.6) and 79.3%p (73.9 to 84.7), respectively]. Age ≥  20 years, higher education level, practising Catholic/Christian religion, having ≥  one living child(ren), and higher household wealth quintile, were associated with increased odds of modern contraceptive use. Conclusion Increased focus is essential on rural, poorer, and less educated populations, particularly in the Northern regions, to effectively address family planning inequities across Cameroon.

Random forest algorithm for predicting postoperative hypotension in oral cancer resection and free flap reconstruction surgery

Scoping review protocol: The chrononutrition factors in association with glycemic outcomes in adult population

Chrononutrition, which examines the relationship between circadian rhythms and nutrition, has been associated with glycemic outcomes in adults. However, published data on delayed meal timing, increased meal frequency and frequent breakfast skipping have shown inconsistent glycemic outcomes due to variations in methodologies and populations studied. This review presents the scoping review protocol designed to map the evidence on the association between chrononutrition factors and glycemic outcomes in adults. The methodology framework from Arksey and O’Malley will be adapted for this scoping review. Relevant publications will be searched on databases including PubMed, EBSCO Host, ProQuest Central, MEDLINE & Ovid, Scopus and Web of Science. This review focuses on original articles published from January 2014 to 2024, involving participants aged 18 years and older, published in English, and encompassing experimental and observational studies. A comprehensive keyword search strategy will be developed to identify relevant articles. Two reviewers will independently screen the abstracts and titles to determine the eligibility. Subsequently, the full text of potentially eligible articles will be reviewed by additional independent reviewer for final inclusion, with full text screening being verified by two reviewers, and interrater reliability will be conducted. Data from the included articles will be extracted, collated and charted to summarize the relevant methods, outcomes and key findings. This Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR) checklist will be used to guide the development of protocol. This scoping review represents a novel approach to summarize the association between chrononutrition factors and glycemic outcomes among adults. We anticipate the findings of the review will provide stakeholder with crucial evidence-based information for development of effective intervention to manage glycemic outcome in adults. This protocol has been prospectively registered in the Open Science Framework (https://doi.org/10.17605/OSF.IO/PA9BU).

Multi-step ahead forecasting of daily streamflow based on the transform-based deep learning model under different scenarios

Energy-environmental evaluation of conventional and variable rate technology sprayer; application of Life Cycle Assessment

The objective of this research was to conduct a comprehensive evaluation of the energy and environmental efficiency of a smart sprayer with a variable rate in orange production. The smart sprayer was developed from a standard orchard sprayer with a fixed rate using different equipment. Energy indicators, encompassing energy efficiency, energy productivity, energy intensity and net energy gain, were calculated. Environmental indicators, including global warming potential, acidification, eutrophication and human toxicity potentials, were estimated using the Life Cycle Assessment (LCA) method in 15 midpoint and 4 endpoint categories. The findings demonstrated that the smart sprayer with a variable rate held a significant advantage over the conventional sprayer with a fixed rate in terms of reducing the pesticide deposition on the trees, lowering pesticide consumption, increasing the energy efficiency and productivity and mitigating the environmental impacts. The maximum pesticide lowering was 46%, achieved at a speed of 1.6 km.hr-1. The energy efficiency and productivity changed from 0.594 to 0.650 and from 0.313 to 0.342 kg.MJ-1, respectively. The Global Warming Potential (GWP) declined from 422.860 to 407.573 kg CO2 eq per ton of orange production. The reduction of chemical pesticide, diesel fuel and agricultural machinery consumption contributed to the decrease in environmental emissions. Consequently, the smart sprayer with a variable rate emerged as a significantly more sustainable and efficient solution for orange production.

Innovative nanocomposite comprising of ZrO2, MnCO3, and CdCO3 for superior crystal violet dye adsorption: synthesis, characterization, and regeneration insights

Global burden of thyroid cancer in adolescents and young adults (aged 15–39 years) from 1990 to 2021: A systematic analysis of the Global Burden of Disease Study 2021

Background Thyroid cancer (TC) is the most common malignancy of the endocrine system and head-and-neck region, yet data on its burden in adolescents and young adults (AYAs) is lacking. This study aimed to estimate the global burden of TC among AYAs from 1990 to 2021. Methods Utilizing the Global Burden of Disease (GBD) 2021 data, we analyzed age-standardized rates of incidence, prevalence, and disability-adjusted life-years (DALYs) on global, regional, and national scales. Joinpoint regression was employed to determine average annual percentage change (AAPC), with frontier analysis revealing regions for improvement. Decomposition analysis assessed the impacts of population aging, growth, and epidemiological changes. Projections for disease burden extending to 2040 were generated using the Bayesian Age-Period-Cohort model. Result In 2021, there were 48.2 thousand incident cases, 436.1 thousand prevalent cases, and 183.5 thousand DALYs worldwide. Meantime, the age-standardized incidence rates (ASIR), age-standardized prevalence rates (ASPR), and age-standardized DALYs rates (ASDR) were 1.6, 14.3 and 6.1 per 100 000, respectively. From 1990 to 2021, the ASIR, ASPR and ASDR increased with AAPCs of 1.73, 1.77, and 0.38, respectively. Socio-demographic resources in Saudi Arabia, Taiwan (Province of China), Iceland, United Arab Emirates, and United States Virgin Islands have the potential to lower ASDR due to TC among AYAs. Furthermore, 13.3 thousand and 34.9 thousand new cases occurred in the males and females in 2021. Among 5 age groups, the highest numbers of incidence, prevalence, and DALYs, along with ASRs, were observed in the 35–39 age group. Global projections indicated a continuous rise in numbers of incidence, prevalence, and DALYs, with estimates of 60.2 thousand, 558.4 thousand, and 199.7 thousand by 2040, respectively. Conclusion The global burden of TC among AYAs was on the rise, with significant disparities by regions, genders, and age groups, highlighting the necessity for targeted and effective interventions.

Therapeutic effect of curcumin derivative GT863 on prion-infected mice

Combining 3D printing technology with customized metal plates for the treatment of complex acetabular fractures: A retrospective study

Purposes The purpose of this study is to evaluate the clinical outcomes of combining 3D printing technology with customized metal plates in the treatment of complex acetabular fractures. Methods A retrospective study was conducted on 42 patients with complex acetabular fractures treated at our hospital between September 1, 2020 and May 31, 2022. The patients were divided into two groups: the conventional group and the 3D printing group, with 21 individuals in each group.The conventional group underwent surgery using traditional surgical techniques, with appropriate bending and adjustment of the metal plates during the procedure. In the 3D printing group, preoperative 3D printing technology was utilized to create a physical model of the fracture, and individualized metal plates were customized based on the model after virtual reduction. Comparison was made between the two groups of patients regarding surgical approach, operative time, instrument handling time, intraoperative blood loss, number of fluoroscopy scans, fracture healing time, quality of fracture reduction postoperatively, hip joint function at 12 months postoperatively, and occurrence of complications during the follow-up period. Results The 3D printing group showed significantly shorter surgical time (124.76±12.89 minutes vs. 174.05±12.51 minutes), instrument operation time (44.57±5.32 minutes vs. 62.9±7.47 minutes), intraoperative blood loss (337.38±51.95 mL vs. 545.24±74.39 mL), and intraoperative fluoroscopy frequency (8.25±1.18 times vs. 10.52±1.6 times) compared to the conventional group (P<0.001). The postoperative fracture reduction quality in the 3D printing group was good in 95.24% (20/21) of cases, significantly higher than the 61.90% (13/21) in the conventional group (P = 0.02). The excellent and good hip function rate in the 3D printing group was 90.48% (19/21), which was also significantly higher than 57.14% (12/21) in the conventional group (P = 0.01). No significant difference was observed between the two groups in fracture healing time (13.95±1.07 weeks vs. 13.81±1.17 weeks) and complication rate (9.52% vs. 28.57%) (P = 0.14; P = 0.24). Conclusion The application of 3D printing technology in conjunction with individualized customization of metal plates for the treatment of complex acetabular fractures can shorten surgical and instrument handling time, reduce intraoperative blood loss, and improve the quality of fracture reduction as well as the recovery of hip joint function.These results provide new insights and technical support for the treatment of complex acetabular fractures.

Machine learning tools match physician accuracy in multilingual text annotation

Does corporate governance mechanism deter earnings management and enhance readability of annual reports?

This study aims to know the impact of earnings management (accrual, real and total) and corporate governance mechanisms on the readability of annual reports. Additionally, the study also seeks to know the moderating impact of corporate governance mechanisms between earnings management (accruals, real and total) and readability of annual reports. The sample of the study consists 250 listed firms of Pakistan Stock Exchange (PSX) for the period of 2014–2022. The hypotheses are tested using System GMM technique. The results of the study suggest that earnings management (accruals, real and total) has negative and significant impact on readability of annual reports. However, all four corporate governance mechanics have a significantly positive impact on readability of annual reports. Additionally, corporate governance mechanics significantly moderates the relationship between earnings management (accruals, real and total) and the readability of annual reports. This study has practical implications for regulators, investors, and firms. The findings of the study may suggest to the Security Exchange Commission Pakistan that authorities improve readability by requiring companies to use clear, understandable language and include appropriate information in annual reports. Firms listed on PSX need to produce more readable annual reports to make information more concise and clear, using simple and short sentences, and familiar words.

Correlation between physiological and biochemical variables during short term adequate protein intake combined with resistance exercise in sedentary adults

SC-GROG followed by L+S reconstruction with multiple sparsity constraints for accelerated Golden-angle-radial DCE-MRI

The GRASP (Golden-angle-radial Sparse Parallel MRI) is a contemporary method for reconstructing dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI). This method combines the temporal incoherence of stack-of-stars Golden-angle-radial sampling pattern and acceleration capability of parallel MRI (PI) and compressed sensing (CS) for highly accelerated free-breathing DCE-MRI reconstruction. GRASP uses Temporal Total Variation (TV) norm as a sparsity transform to promote sparsity among multi-coil MRI data and Nonlinear Conjugate Gradient (NL-CG) algorithm to obtain an optimal solution. Additionally, GRASP uses NUFFT gridding to map Golden-angle-radial data to Cartesian grid before NL-CG based CS reconstruction. However, major limitations of GRASP include the temporal averaging effect due to Temporal TV, leading to a degradation in the dynamic contrast of DCE-MRI, and a high computational burden/reconstruction time due to repeated NUFFT gridding/degridding in NL-CG reconstruction. This paper introduces a novel approach to address limitations in GRASP reconstruction technique for free-breathing DCE-MRI. The proposed method combines SC-GROG gridding with low-rank plus sparse (L+S) reconstruction using multiple sparsity constraints for accelerated Golden-angle-radial DCE-MRI with improved temporal resolution and dynamic contrast. Monotone FISTA with variable acceleration (MFISTA-VA) is used to optimize the L+S optimization problem. Further, SC-GROG gridding is used to map Golden-angle radial data to Cartesian grid before L+S reconstruction. The proposed method is tested on two different 3T free-breathing in-vivo DCE-MRI datasets. Reconstruction results of the proposed method are evaluated by using: (i) convergence error, (ii) peak and mean values of arterial signal intensity in the selected region of interest (ROI) of DCE MR Images, and (iii) reconstruction time. Results show that the proposed method provides significant improvements in the reconstruction time and dynamic contrast than the conventional Golden-angle-radial DCE-MRI reconstruction techniques (i.e., GRASP, XD-GRASP). Furthermore, convergence analysis shows that integration of MFISTA-VA in L+S reconstruction provides faster convergence compared to conventional L+S reconstruction.

Tracing the Neovolcanic zone along the sediment-covered regions of the Red Sea Rift

Abstract The Red Sea Rift is an ultra-slow spreading rift filled with Miocene salt and younger sediments. While volcanic features can be observed in exposed areas in the southern Red Sea Rift, evidence of volcanism in the sediment-blanketed regions in the central and northern Red Sea Rift has been lacking, leaving open whether the mid-ocean rift axis continues beneath them. Here, we present new multichannel seismic and high-resolution bathymetric data of these blanketed regions. Our data reveals multiple instances where oceanic crust can be traced beneath the evaporite cover, forming volcanic edifices protruding through the sediment cover. We identify abundant circular depressions in the sediment cover as volcanic craters, which formed by deep-sea explosive volcanism or caldera collapses. The common occurrence of volcanic features in the sediment-covered regions supports the continuous formation of oceanic crust along large parts of the Red Sea Rift.

Publication bias in the social sciences since 1959: Application of a regression discontinuity framework

While publication bias has been widely documented in the social sciences, it is unclear whether the problem aggravated over the last decades due to an increasing pressure to publish. We provide an in-depth analysis of publication bias over time by creating a unique data set, consisting of 12340 test statistics extracted from 571 papers published in 1959-2018 in the Quarterly Journal of Economics. We, further, develop a new methodology to test for discontinuities at the thresholds of significance. Our findings reveal, that, first, in contrast to our expectations, publication bias was already present many decades ago, but that, second, bias patterns notably changed over time. As such, we observe a transition from bias at the 10 percent to bias at the 5 percent significance level. We conclude that these changes are influenced by increasing computational possibilities as well as changes in the acceptance rates of scientific top journals.

Anisotropy visualisation from X-ray diffraction of biological apatite in mixed phase calcified tissue samples

Abstract X-ray diffraction is widely used to characterise the mineral component of calcified tissue. Broadening of the diffraction peaks yields valuable information on the size of coherently diffracting domains, sometimes loosely described as crystallite size or crystallinity. These domains are markedly anisotropic, hence a single number describing their size is misleading. We present a novel variation on a method for visualising crystallographic anisotropy in X-ray diffraction data. This provides an intuitively interpretable depiction of crystalline domain size and anisotropy. The new method involves creating a polar plot of calculated domain thickness for peaks in a diffractogram versus crystallographic direction. Points with the least error are emphasised. Anisotropic domain dimensions are calculated by refining an ellipsoidal model in a whole pattern fit. These dimensions are then used to overlay an ellipse on the peak broadening plot. This is illustrated by application of the method to calcifications in breast tissue with suspected cancer, which frequently contain whitlockite as well as nanocrystalline apatite. Like most biogenic apatite, this exhibits markedly anisotropic peak broadening. The nature of this anisotropy offers potentially useful information on normal function and pathology of calcified tissue and is a frequently neglected crystallographic feature of these materials.

Establishing the effect of computed tomography reconstruction kernels on the measure of bone mineral density in opportunistic osteoporosis screening