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The role of ultrasound combined with water bath in the establishment of animal models of rat urethral stricture

Network structure influences the strength of learned neural representations

Development of a multi-epitope chimeric vaccine in silico against Babesia bovis, Theileria annulata, and Anaplasma marginale using computational biology tools and reverse vaccinology approach

The three rickettsial parasites- Babesia bovis, Theileria annulata and Anaplasma Marginale are responsible for causing Babesiosis, Theileriosis and Anaplasmosis among cattle. These diseases exist due to spreading of infected ticks. A large number of cattle were found to suffer from mixed infections caused by the three parasites at the same time. Due to these reasons cattle have been devoid of milk production with reduced meat availability. Hence, it is a matter of urgency for the immunity of cattle to exhibit resilience against all three rickettsial parasites. It could be possible if trials are carried out after producing a subunit chimeric vaccine against the rickettsial protozoan parasites and introducing it into the bloodstream of the cattle species. In this paper, we have used the process of reverse vaccinology to conduct a study in which we have developed a multi-epitope subunit chimeric vaccine against three protozoan parasites. We constructed three chimeric vaccine sequences from which only one chimeric vaccine construct was found to be an effective and efficient vaccine which is stable with high solubility and negative allergenicity. Following that, we performed molecular docking of the refined chimeric vaccine construct with Rp-105 and TLR-9. It was observed that the chimeric vaccines interacted with the receptors with high binding energy. Immune simulation was also performed to determine the potentiality of the chimeric vaccine for eliciting an immune response. The best-designed chimeric vaccine construct was then reverse transcribed and adapted for the host E. coli K12 strain which was later inserted into the pET28a (+) vector for the cloning and expression of the vaccine. The study could be a good initiative for the development of an effective chimeric vaccine against bovine parasites.

Acoustic emission characteristics and damage constitutive model of fractured sandstone under uniaxial compression

Branched endosomal disruptor (BEND) lipids mediate delivery of mRNA and CRISPR-Cas9 ribonucleoprotein complex for hepatic gene editing and T cell engineering

Sulfur dioxide exposure of mice induces peribronchiolar fibrosis—A defining feature of deployment-related constrictive bronchiolitis

Deployment-related constrictive bronchiolitis (DRCB) has emerged as a health concern in military personnel returning from Southwest Asia. Exposure to smoke from a fire at the Al-Mishraq sulfur enrichment facility and/or burn pits was reported by a subset of Veterans diagnosed with this disorder. DRCB is characterized by thickening and fibrosis of small airways (SA) in the lung, but whether these are related to toxin inhalation remains uncertain. The aim of this study was to determine whether sulfur dioxide (SO2) exposure can induce histopathological features of DRCB. C57BL/6J mice were exposed to 50 ± 5 ppm SO2 for one hour/day for five consecutive days. Lungs from exposed and unexposed mice were evaluated on day 5, 10, and 20. Lung sections were stained using hematoxylin and eosin, Masson’s trichrome, picrosirius red (PSR), and immunofluorescence for club cell secretory protein, acetylated-α-tubulin, and Ki67. Small airway wall thickness was determined by morphometric analysis and collagen content was quantified by measuring PSR fluorescence intensity. CurveAlign and CT-FIRE were used to enumerate collagen fibers and assess fibers’ width and length, respectively. Leukocyte subpopulations were quantified by flow cytometry analysis. This protocol of SO2 exposure of mice: 1) Triggered club cell proliferation and differentiation; 2) Increased SA wall thickness by inducing subepithelial collagen deposition; and 3) Increased width, length, and number, but not density, of collagen fibers within the wall of SA. 4) Induced no peribronchiolar inflammation or respiratory bronchiolitis. Collectively, these findings implicate club cell proliferation and differentiation in the profibrotic response to SO2 and identify this SO2 exposure as a potentially effective though imperfect model for studying SA fibrosis in DRCB.

Multi-assay assessment of cytotoxicity reveals multiple mechanisms of action in 3D microtissues

Lysosomes finely control macrophage inflammatory function via regulating the release of lysosomal Fe2+ through TRPML1 channel

Physical measures of physical functioning as prognostic factors in predicting outcomes for neck and thoracic pain: Protocol for a systematic review

Background Spinal pain is prevalent and burdensome worldwide. A large proportion of patients with neck and thoracic pain experience chronic symptoms, which can significantly impact their physical functioning. Therefore, it is important to understand factors predicting outcome to inform effective examination and treatment. Knowledge of physical measures of physical functioning as prognostic factors can enhance patient-centered care and aid decision-making. The evidence regarding physical outcome measures as prognostic factors for neck and thoracic pain is unclear. The objective of this study is to summarize the evidence for physical outcome measures of physical functioning as prognostic factors in predicting outcomes in people with neck and thoracic pain. Methods and analysis This systematic review follows Cochrane guidelines and aligns with the Preferred Reporting Items for Systematic Review and Meta-Analysis Protocols (PRISMA-P). Included studies will be prospective longitudinal cohort studies in which physical measures of physical functioning are explored as prognostic factors for adults with neck and thoracic pain. A comprehensive search will be performed in key databases (MEDLINE, EMBASE, CINAHL, Scopus, and Web of Science) and the grey literature, with hand searches of key journals, and the reference lists of included studies. Two reviewers will independently perform study selection, data extraction, risk of bias assessment (QUIPS, Quality in Prognostic Studies tool), and quality assessment (Grading of Recommendations Assessment, Development, and Evaluation). Implications This systematic review will identify physical measures of physical functioning prognostic factors for neck and thoracic pain populations. Findings will inform researchers about gaps in existing evidence, and clinicians about factors to aid their clinical decisions and to enhance the overall quality of care for individuals with neck and thoracic pain.

Effective dipole model for electrostatic interactions between polarizable spherical particles in particle scale simulations

Broad substrate scope C-C oxidation in cyclodipeptides catalysed by a flavin-dependent filament

Abstract Cyclic dipeptides are produced by organisms across all domains of life, with many exhibiting anticancer and antimicrobial properties. Oxidations are often key to their biological activities, particularly C-C bond oxidation catalysed by tailoring enzymes including cyclodipeptide oxidases. These flavin-dependent enzymes are underexplored due to their intricate three-dimensional arrangement involving multiple copies of two distinct small subunits, and mechanistic details underlying substrate selection and catalysis are lacking. Here, we determined the structure and mechanism of the cyclodipeptide oxidase from the halophile Nocardiopsis dassonvillei (NdasCDO), a component of the biosynthetic pathway for nocazine natural products. We demonstrated that NdasCDO forms filaments in solution, with a covalently bound flavin mononucleotide (FMN) cofactor at the interface between three distinct subunits. The enzyme exhibits promiscuity, processing various cyclic dipeptides as substrates in a distributive manner. The reaction is optimal at high pH and involves the formation of a radical intermediate. Pre-steady-state kinetics, a significant solvent kinetic isotope effect, and the absence of viscosity effects suggested that a step linked to FMN regeneration controlled the reaction rate. Our work elucidates the complex mechanistic and structural characteristics of this dehydrogenation reaction, positioning NdasCDO as a promising biocatalyst and expanding the FMN-dependent oxidase family to include enzyme filaments.

Effect of bar jump height on kinetics and kinematics of take-off in agility dogs

Sport-related injuries have been reported to occur in around one-third of agility dogs. Higher bar height in competitions has been shown to increase odds of an injury. This study evaluated the effect of bar height on the kinetics and kinematics at take-off to a bar jump. Forces from fore- and hindlimb pairs were measured with force plates. A three-dimensional motion capture system was used to measure sagittal joint kinematics of the shoulder, elbow, carpus, hip, stifle, and tarsal joints, as well as limb coordination, trunk horizontal velocity, take-off distance, and take-off angle. Data were collected for 17 Border Collies at three different bar heights: 80%, 100%, and 120% of wither height. A linear mixed model was used for statistical analysis. At higher bar height, decelerative impulses were greater and accelerative impulses decreased along with greater vertical impulses from forelimb and hindlimb pairs (p<0.001). Post-hoc analyses revealed differences between all three bar heights (p<0.01), except for forelimb decelerative impulse, which did not differ between 80% and 100% heights. Sagittal range of motion was greater, through increased peak flexion or extension, at 120% bar height than at lower bar heights (p<0.05) in almost all measured limb joints. The only exceptions were leading forelimb shoulder and elbow joints and leading hindlimb hip joint. With increasing bar height, the horizontal velocity of trunk decreased (p<0.001), and take-off angle became steeper (p<0.001), with all bar heights differing from each other (p<0.01). Temporal synchronicity between trailing and leading limbs increased and craniocaudal distance decreased in forelimbs (p<0.05) and hindlimbs (p<0.01) as bar height increased. Increased vertical and decelerative impulses, as well as the greater peak flexion and extension angles of joints, may indicate greater load on the tissues at higher bar heights, which could explain the increased odds of injury at higher bar heights in agility dogs.

Proliferative and viability effects of two cyanophages on freshwater bloom-forming species Microcystis aeruginosa and Raphidiopsis raciborskii vary between strains

Artificial cells with all-aqueous droplet-in-droplet structures for spatially separated transcription and translation

Can strengthening digital infrastructure enhance productivity in the cultural industry? evidence from Tibet

This study, grounded in the Total Factor Productivity (TFP) theoretical framework, examines the impact of digital infrastructure on the productivity of Tibet’s cultural industry from 2011 to 2021. It aims to uncover how the innovative allocation of production factors can enhance new-quality productivity. The core aspect of new-quality productivity is the improvement of TFP, with digital infrastructure promoting the cultural industry’s development by optimizing industrial agglomeration, improving logistics efficiency, and reducing the urban-rural consumption gap. The findings suggest that while digital infrastructure leads to geographic dispersion of the industry—challenging traditional industrial agglomeration theory—it significantly enhances the efficiency of the cultural industry within Tibet’s unique socio-economic context. Moreover, despite the region’s geographical constraints on logistics efficiency, digital platforms effectively reduce the urban-rural consumption gap, improving market access and the quality of cultural services in remote areas. Additionally, digital infrastructure helps bridge the digital divide between urban and rural areas, further fostering balanced regional consumption and digital inclusion. From a Total Factor Productivity perspective, this study reveals key pathways to improving new-quality productivity, offering both theoretical foundations for policymakers and practical guidance for the development of cultural industries in similarly structured regions.

Bioavailability study of enantiopure (S)-Equol in CD(SD)IGS rats

Electrosynthesis of ethylene glycol from biomass glycerol

Exploring volatility transmission in Capesize freight contracts: Insights from energy and commodity markets

Analyzing the interactions between spot and time charter freight is crucial for the maritime industry. While numerous studies have explored the relationship between average freight indices and spillover effects, a gap remains in understanding the deeper connections between inter-regional shipping routes and chartering contracts. This research investigates the role of Capesize freight dynamics in shaping the regional dry bulk freight market, with a focus on the influence of energy and commodity price fluctuations. Utilizing the TVP-VAR model, we identify distinct trends across various investment horizons. The analysis reveals that short-term spillovers dominate the system, with crude oil serving as a consistent shock transmitter within the time charter network. The China-Brazil route drives spillovers across all periods, while the Australia-China route transitions from absorbing short-term volatility to transmitting long-term shocks. Similarly, the Tubarão-Rotterdam and Bolivar-Rotterdam routes display comparable shifts, transmitting short-term spillovers but absorbing long-term volatility. These findings offer valuable insights for stakeholders seeking to manage risks amidst economic and geopolitical uncertainties.

Preparation of efficient and reusable lanthanum and iron co-modified soda residue for selective phosphate removal from domestic sewage

Differential impact from individual versus collective misinformation tagging on the diversity of Twitter (X) information engagement and mobility

Abstract Fears about the destabilizing impact of misinformation online have motivated individuals and platforms to respond. Individuals have increasingly challenged others’ online claims with fact-checks in pursuit of a healthier information ecosystem and to break down echo chambers of self-reinforcing opinion. Using Twitter (now X) data, here we show the consequences of individual misinformation tagging: tagged posters had explored novel political information and expanded topical interests immediately prior, but being tagged caused posters to retreat into information bubbles. These unintended consequences were softened by a collective verification system for misinformation moderation. In Twitter’s new feature, Community Notes, misinformation tagging was peer-reviewed by other fact-checkers before revelation to the poster. With collective misinformation tagging, posters were less likely to retreat from diverse information engagement. Detailed comparison demonstrated differences in toxicity, sentiment, readability, and delay in individual versus collective misinformation tagging messages. These findings provide evidence for differential impacts from individual versus collective moderation strategies on the diversity of information engagement and mobility across the information ecosystem.