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Human and primate categorical understanding of color
Selective utilization of medicinal polysaccharides by human gut Bacteroides and Parabacteroides species
The value of returning a sample of the Martian atmosphere
The elemental and isotopic abundances of major species in the Martian atmosphere have been determined, but analyses often lack sufficient precision, and those of minor and trace species are frequently not well known. Many important questions about the evolution and current state of Mars require the kind of knowledge that can be gained from analysis of a returned sample of the Martian atmosphere. Key target species include the noble gases, nitrogen, and various species containing carbon, hydrogen, and oxygen, such as methane. More detailed analyses will no doubt provide measurements of other species that will allow insights of their own. These volatiles can constrain the origin of the Martian atmosphere, exchange of volatiles between the surface and interior, polar processes, and (in the case of methane) the possibility of extant biology on Mars.
Potential plant extinctions with the loss of the Pleistocene mammoth steppe
Abstract During the Pleistocene-Holocene transition, the dominant mammoth steppe ecosystem across northern Eurasia vanished, in parallel with megafauna extinctions. However, plant extinction patterns are rarely detected due to lack of identifiable fossil records. Here, we introduce a method for detection of plant taxa loss at regional (extirpation) to potentially global scale (extinction) and their causes, as determined from ancient plant DNA metabarcoding in sediment cores (sedaDNA) from lakes in Siberia and Alaska over the past 28,000 years. Overall, potential plant extinctions track changes in temperature, in vegetation, and in megafauna extinctions at the Pleistocene-Holocene transition. Estimated potential plant extinction rates were 1.7–5.9 extinctions per million species years (E/MSY), above background extinction rates but below modern estimates. Major potential plant extinction events were detected around 17,000 and 9000 years ago which lag maximum vegetation turnover. Our results indicate that herbaceous taxa and taxa contributing less to beta diversity are more vulnerable to extinction. While the robustness of the estimates will increase as DNA reference libraries and ancient sedaDNA data expand, the available data support that plants are more resilient to environmental changes than mammals.
Parameter study of a 5G array antenna at 28 GHz
Characterizing progenitor cells in developing and injured spinal cord: Insights from single-nucleus transcriptomics and lineage tracing
Various mature tissue-resident cells exhibit progenitor characteristics following injury. However, the existence of endogenous stem cells with multiple lineage potentials in the adult spinal cord remains a compelling area of research. In this study, we present a cross-species investigation that extends from development to injury. We used single-nucleus transcriptomic sequencing and genetic lineage tracing to characterize neural cells in the spinal cord. Our findings show that ciliated ependymal cells lose neural progenitor gene signatures and proliferation ability following the differentiation of NPCs within the ventricular zone. By combining single-nucleus transcriptome datasets from the rhesus macaque spinal cord injury (SCI) model with developmental human spinal cord datasets, we revealed that ciliated ependymal cells respond minimally to injury and cannot revert to a developmental progenitor state. Intriguingly, we observed astrocytes transdifferentiating into mature oligodendrocytes postinjury through lineage tracing experiments. Further analysis identifies an intermediate-state glial cell population expressing both astrocyte and oligodendrocyte feature genes in adult spinal cords. The transition ratio from astrocytes into oligodendrocytes increased after remodeling injury microenvironment by functional scaffolds. Overall, our results highlight the remarkable multilineage potential of astrocytes in the adult spinal cord.
A multi-model study to inform the United States’ 2035 NDC
Chemical signatures of social information in Barbary macaques
Abstract Primates are well-known for their complex social lives and intricate social relationships, which requires them to obtain and update social knowledge about conspecifics. The sense of smell may provide access to social information that is unavailable in other sensory domains or enhance the precision and reliability of other sensory cues. However, the cognition of social information in catarrhine primates has been studied primarily in the visual and auditory domain. We assessed the social information content of body odor in a catarrhine primate, the Barbary macaque ( Macaca sylvanus ), in three semi-free ranging groups at Affenberg Salem, Germany. In particular, we related socially relevant attributes (identity, genetic relatedness, rank, sex, age, group membership) to chemical profiles of body odor. We applied non-invasive active sampling via thermal desorption tubes and analyzed samples by gas chromatography–mass spectrometry. We found robust evidence for individual odor signatures and limited support for kin signatures. Chemical profiles were also related to group membership, but little to rank, sex or age. The detected associations between chemical profiles and socially relevant attributes form the theoretical foundations for olfactory information transfer, highlighting the potential of body odor to provide valuable social information in this highly visually oriented primate.
Mars Sample Return: From collection to curation of samples from a habitable world
NASA’s Mars 2020 mission has initiated collection of samples from Mars’ Jezero Crater, which has a wide range of ancient rocks and rock types from lavas to lacustrine sedimentary rocks. The Mars Sample Return (MSR) Campaign, a joint effort between NASA and ESA, aims to bring the Perseverance collection back to Earth for intense scientific investigation. As the first return of samples from a habitable world, there are important challenges to overcome for the successful implementation of the MSR Campaign from the point of sample collection on Mars to the long-term curation of the samples on Earth. In particular, the successful execution of planetary protection protocols adds well-warranted complexity to every step of the process from the two MSR Program flight elements to the ground element at the sample receiving facility (SRF). In this contribution, we describe the architecture of the MSR Campaign, with a focus on infrastructure needs for the curation (i.e., the clean storage, processing, and allocation) of pristine Martian samples. Curation is a science-enabling and planetary protection-enabling activity, and the curation practices described in this contribution for the SRF and any long-term curation facility will enable the sample safety assessment, initial scientific investigations of the samples, and establish the MSR collection as a scientific resource that will enable generations of science and discovery through studies of the returned Mars samples. The planetary protection and curation processes established for MSR will provide critical insights into potential future sample return missions from other habitable worlds like Enceladus and Europa.
Deep neural networks have an inbuilt Occam’s razor
Abstract The remarkable performance of overparameterized deep neural networks (DNNs) must arise from an interplay between network architecture, training algorithms, and structure in the data. To disentangle these three components for supervised learning, we apply a Bayesian picture based on the functions expressed by a DNN. The prior over functions is determined by the network architecture, which we vary by exploiting a transition between ordered and chaotic regimes. For Boolean function classification, we approximate the likelihood using the error spectrum of functions on data. Combining this with the prior yields an accurate prediction for the posterior, measured for DNNs trained with stochastic gradient descent. This analysis shows that structured data, together with a specific Occam’s razor-like inductive bias towards (Kolmogorov) simple functions that exactly counteracts the exponential growth of the number of functions with complexity, is a key to the success of DNNs.
Dispersive nodal fermions along grain boundaries in Floquet topological crystals
A tale of two planets: Disparate evolutionary models for Mars inferred from radiogenic isotope compositions of Martian meteorites
The radiogenic isotopic compositions of basaltic Martian meteorites (shergottites) and clinopyroxene/olivine cumulate meteorites (nakhlite/chassignites) are used to define the global evolution of Mars. However, the two main groups of meteorites demonstrate that their sources underwent divergent styles of magmatic evolution. The shergottites portray a planet that differentiated ~4.52 billion years ago via solidification of a magma ocean, producing incompatible element-depleted and -enriched reservoirs that remained isolated until melt production. In contrast, the reservoir from which the nakhlite/chassignites derive may have formed earlier, produced melts that fractionated Sm/Nd and Hf/W differently, was compositionally less variable, and experienced a significantly more complex history following primordial differentiation than the shergottite sources. The disparate histories recorded by these two groups of meteorites elucidate important questions that could be addressed by acquiring additional samples. Obtaining samples that shared the isotopic systematics of the shergottites would provide confidence that extrapolating the primordial differentiation history of Mars from shergottite radiogenic isotope systematics is reasonable. Returned samples from Mars will also constrain the physical locations of the meteorite source regions, providing insights into the general structure of the Martian mantle. In addition, they will help constrain the phases present in the martian mantle during melting and the conditions under which they are stable. Finally, identifying an evolved lithology that satisfies the geochemical and isotopic constraints placed on the incompatible element-enriched endmember observed in the shergottites would define the nature of magmatic evolution on Mars and whether it is more akin to processes on the Earth or the Moon.
Metagenome-guided culturomics for the targeted enrichment of gut microbes
Abstract The gut microbiome significantly impacts human health, yet cultivation challenges hinder its exploration. Here, we combine deep whole-metagenome sequencing with culturomics to selectively enrich for taxa and functional capabilities of interest. Using a modified commercial base medium, 50 growth modifications were evaluated, spanning antibiotics, physico-chemical conditions, and bioactive compounds. Whole-metagenome sequencing identified medium additives, like caffeine, that enhance taxa often associated with healthier subjects (e.g., Lachnospiraceae, Oscillospiraceae, Ruminococcaceae). We also explore the impact of modifications on the composition of cultured communities and establish a link between medium preference and microbial phylogeny. Leveraging these insights, we demonstrate that combinations of media modifications can further enhance the targeted enrichment of taxa and metabolic functions, such as Collinsella aerofaciens, or strains harboring biochemical pathways involved in dopamine metabolism. This streamlined, scalable approach unlocks the potential for selective enrichment, advancing microbiome research by understanding the impact of different cultivation parameters on gut microbes.
Impact of irrelevant speech and non-speech sounds on serial recall of verbal and spatial items in children and adults
Abstract Short-term memory for sequences of verbal items such as written words is reliably impaired by task-irrelevant background sounds, a phenomenon known as the “Irrelevant Sound Effect” (ISE). Different theoretical accounts have been proposed to explain the mechanisms underlying the ISE. Some of these assume specific interference between obligatory sound processing and phonological or serial order representations generated during task performance, whereas other posit that background sounds involuntarily divert attention away from the focal task. To explore the roles of phonological processing, serial order retention, and attention control, we analyzed the effects of environmental non-speech sounds and unfamiliar speech on serial recall of verbal items (pictures representing German nouns) and spatial items (dot locations) in children (n = 137) and adults (n = 98). In the verbal task, both age groups were equally affected by background sounds, with speech impairing recall more than environmental sounds. In the spatial task, no ISE was found in adults and fourth graders, but third graders exhibited significant performance impairment from both sounds. There was no habituation to the sound effects across the experimental trials. The findings indicate that both specific interference and attention capture may contribute to the ISE, with the impact of attention capture potentially decreasing with age.
What we can learn about Mars from the magnetism of returned samples
The Red Planet is a magnetic planet. The Martian crust contains strong magnetization from a core dynamo that likely was active during the Noachian period when the surface may have been habitable. The evolution of the dynamo may have played a central role in the evolution of the early atmosphere and the planet’s transition to the current cold and dry state. However, the nature and history of the dynamo and crustal magnetization are poorly understood given the lack of well-preserved, oriented, ancient samples with geologic context available for laboratory study. Here, we describe how magnetic measurements of returned samples could transform our understanding of six key unknowns about Mars’ planetary evolution and habitability. Such measurements could i) determine the history of the Martian dynamo field’s intensity; ii) determine the history of the Martian dynamo field’s direction; iii) test the hypothesis that Mars experienced plate tectonics or true polar wander; iv) constrain the thermal and aqueous alteration history of the samples; v) identify sources of Martian crustal magnetization and vi) characterize sedimentary and magmatic processes on Mars. We discuss how these goals can be achieved using future laboratory analyses of samples acquired by the Perseverance rover.
Vialess heterogeneous skin patch for multimodal monitoring and stimulation
Abstract System-level wearable electronics require to be flexible to ensure conformal contact with the skin, but they also need to integrate rigid and bulky functional components to achieve system-level functionality. As one of integration methods, folding integration offers simplified processing and enhanced functionality through rigid-soft region separation, but so far, it has mainly been applied to modality of electrical sensing and stimulation. This paper introduces a vialess heterogeneous skin patch with multi modalities that separates the soft region and strain-robust region through folded structure. Our system includes electrical and optical modalities for hemodynamic and cardiovascular monitoring, and a force-electrically driven micropump for drug delivery. Each modality is demonstrated through on-demand drug delivery, flexible waveguide-based PPG monitoring, and ECG and body movement monitoring. Wireless data transmission and real-time measurement validate the feedback operation for multi-modalities. This engineered closed-loop platform offers the possibility for broad applications, including cardiovascular monitoring and chronic disease management.
Research on coordination mechanism between agricultural green and land ecosystem in Yellow River Basin
Constraining the history of water and climate on Mars through light element stable isotope analysis of volatiles in returned martian samples
Much has been learned about Mars through data returned from space missions and analyses of martian meteorites. There are, however, many questions still outstanding which cannot currently be answered—including the issue of whether there is, or was, life on Mars. The return of a cache of samples—including of the atmosphere—from separate locations in Jezero Crater and with differing petrogeneses will provide the international community with the opportunity to explore part of the evolutionary history of Mars in great detail. Specifically, measurements of the isotopic compositions of the light elements H, C, N, O, Cl, and S can be used to follow how volatile species cycle through the different martian volatile reservoirs (atmosphere, lithosphere, cryosphere, and hydrosphere). Measurement of isotopic fractionation enables inference of the environmental conditions (e.g., temperature, water/rock ratio) under which fractionation occurred. Knowing the contextual relationship of the materials to their geological settings, coupled with precise compositional measurements will enable a more thorough understanding of martian volatile history and allow a picture to be constructed of water and climate on Mars as represented at Jezero Crater.
Cryo-EM structure and evolutionary history of the conjugation surface exclusion protein TraT
Abstract Conjugation plays a major role in dissemination of antimicrobial resistance genes. Following transfer of IncF-like plasmids, recipients become refractory to a second wave of conjugation with the same plasmid via entry (TraS) and surface (TraT) exclusion mechanisms. Here, we show that TraT from the pKpQIL and F plasmids (TraT pKpQIL and TraT F ) exhibits plasmid surface exclusion specificity. The cryo-EM structures of TraT pKpQIL and TraT F reveal that they oligomerise into decameric champagne bottle cork-like structures, which are anchored to the outer membrane via a diacylglycerol and palmitic acid modified α-helical barrel domain. Unexpectedly, we identify chromosomal TraT homologues from multiple Gram-negative phyla which form numerous divergent lineages in a phylogenetic tree of TraT sequences. Plasmid-associated TraT sequences are found in multiple distinct lineages, including two separate clades incorporating TraT from Enterobacteriaceae IncF/F-like and Legionellaceae F-like plasmids. These findings suggest that different plasmid backbones have acquired and co-opted TraT on independent occasions.