Browse Articles

Discover research articles across all indexed journals

Incomplete remyelination via therapeutically enhanced oligodendrogenesis is sufficient to recover visual cortical function

Nature Communications Gustavo Della-Flora Nunes, Lindsay A. Osso, Johana A. Haynes et al. Jan 16, 2025 DOI: 10.1038/s41467-025-56092-6

Analysis of entropy on the European markets of energy and energy commodities prices

PLoS ONE Daniel Papla, Rafał Siedlecki Jan 16, 2025 DOI: 10.1371/journal.pone.0315348

The paper analyzes the problem of entropy in the moments of transition from a normal economic situation (2015–2019) to the Pandemic period (2020–2021) and the period of Russia’s attack on Ukraine (2022–2023). The research in the article is based on the analysis of electricity, oil, coal, and gas prices in 27 countries of the European Union and Norway. The daily data cover the period from January 1, 2015, to March 30, 2023, and were analyzed using two-dimensional sets of electricity and commodity prices. The work uses the time dependent James-Stein estimator of the Shannon informational entropy.

TRIM28 is an essential regulator of three-dimensional chromatin state underpinning CD8+ T cell activation

Nature Communications Kun Wei, Ruifeng Li, Xiaohong Zhao et al. Jan 16, 2025 DOI: 10.1038/s41467-025-56029-z

Correction: Genetic polymorphisms of muscular fitness in young healthy men

PLoS ONE Tomas Venckunas, Hans Degens Jan 16, 2025 DOI: 10.1371/journal.pone.0317856

Reduced contribution of sulfur to the mass extinction associated with the Chicxulub impact event

Nature Communications Katerina Rodiouchkina, Steven Goderis, Cem Berk Senel et al. Jan 16, 2025 DOI: 10.1038/s41467-024-55145-6

Abstract The Chicxulub asteroid impact event at the Cretaceous-Paleogene (K-Pg) boundary ~66 Myr ago is widely considered responsible for the mass extinction event leading to the demise of the non-avian dinosaurs. Short-term cooling due to massive release of climate-active agents is hypothesized to have been crucial, with S-bearing gases originating from the target rock vaporization considered an important driving force. Yet, the magnitude of the S release remains poorly constrained. Here we empirically estimate the amount of impact-released S relying on the concentration of S and its isotopic composition within the impact structure and a set of terrestrial K-Pg boundary ejecta sites. The average value of 67 ± 39 Gt obtained is ~5-fold lower than previous numerical estimates. The lower mass of S-released may indicate a less prominent role for S emission leading to a milder impact winter with key implications for species survival during the first years following the impact.

Long-term health consequences and costs of changes in alcohol consumption in England during the COVID-19 pandemic

PLoS ONE Joshua Card-Gowers, Sadie Boniface, Jamie Brown et al. Jan 16, 2025 DOI: 10.1371/journal.pone.0314870

Background and aims The COVID-19 pandemic led to changes in alcohol consumption in England. Evidence suggests that one-fifth to one-third of adults increased their alcohol consumption, while a similar proportion reported consuming less. Heavier drinkers increased their consumption the most and there was a 20% increase in alcohol-specific deaths in England in 2020 compared with 2019, a trend continuing through 2021 and 2022. This study aimed to quantify future health, healthcare, and economic impacts of changes in alcohol consumption observed during the COVID-19 pandemic. Methods This study used a validated microsimulation model of alcohol consumption and health outcomes. Inputted data were obtained from the Alcohol Toolkit Study, and demographic, health and cost data from published literature and publicly available datasets. Three scenarios were modelled: short, medium, and long-term, where 2020 drinking patterns continue until the end of 2022, 2024, and 2035, respectively. Disease incidence, mortality, and healthcare costs were modelled for nine alcohol-related health conditions. The model was run from 2020 to 2035 for the population of England and different occupational social grade groups. Results In all scenarios, the microsimulation projected significant increases in incident cases of disease, premature mortality, and healthcare costs, compared with the continuation of pre-COVID-19 trends. If COVID-19 drinking patterns continue to 2035, we projected 147,892 excess cases of diseases, 9,914 additional premature deaths, and £1.2 billion in excess healthcare costs in England. The projections show that the more disadvantaged (C2DE) occupational social grade groups will experience 36% more excess premature mortality than the least disadvantaged social group (ABC1) under the long-term scenario. Conclusions Alcohol harm is projected to worsen as an indirect result of the COVID-19 pandemic and inequalities are projected to widen. Early real-world data corroborate the findings of the modelling study. Increased rates of alcohol harm and healthcare costs are not inevitable but evidence-based policies and interventions are required to reverse the impacts of the pandemic on alcohol consumption in England.

The Human Microglia Atlas (HuMicA) unravels changes in disease-associated microglia subsets across neurodegenerative conditions

Nature Communications Ricardo Martins-Ferreira, Josep Calafell-Segura, Bárbara Leal et al. Jan 16, 2025 DOI: 10.1038/s41467-025-56124-1

Factors associated with knowledge and practice regarding oxygen administration: A cross-sectional study among registered nurses working in wards and ICUs at Muhimbili National Hospital in Dar es Salaam, Tanzania

PLoS ONE Magdalena S. Kimario, Joel Seme Ambikile, Masunga K. Iseselo Jan 16, 2025 DOI: 10.1371/journal.pone.0317620

Background Oxygen is a vital therapy approved by WHO, crucial for critically ill patients as a supplemental treatment. Nurses’ pivotal role in oxygen administration is poorly understood. This study aimed to assess factors associated with oxygen administration to critically ill patients among nurses at Muhimbili National Hospital (MNH) in Dar es Salaam, Tanzania. Methods A descriptive cross-sectional study was conducted among 208 nurses using a simple random technique to recruit respondents. Data were collected in May 2022 via a self-administered questionnaire, designed and tested by the authors. Mean knowledge and practice scores were used to categorize knowledge and practice as high or low respectively. The Chi-square test and multiple logistic regression analyses were performed to evaluate factors associated with knowledge and practice regarding oxygen administration. Statistical significance was determined at a p-value less than 0.05. Results Of the 208 respondents, 96(46.2%) and 78(37.5%) had low knowledge and low practices regarding oxygen administration, respectively. Receiving in-service training on oxygen administration (AOR: 3.515; p<0.001) was positively associated with knowledge of oxygen administration. None of the factors showed a statistically significant association with the practice of oxygen administration. Conclusion A substantial proportion of nurses had inadequate knowledge and practices regarding oxygen administration. While none of the assessed factors were found to have a statistical association with practice on oxygen administration, it is important to note their clinical significance. Healthcare institutions can benefit from implementing regular in-service training programs to address these knowledge and skills gaps and ensure that nurses are well-prepared for proper oxygen administration. Additionally, ongoing monitoring and support are essential to help translate improved knowledge into effective clinical practices.

Joint speech and text machine translation for up to 100 languages

Nature Loïc Barrault, Yu-An Chung, Mariano Coria Meglioli et al. Jan 16, 2025 DOI: 10.1038/s41586-024-08359-z

Tunning valence state of cobalt centers in Cu/Co-CoO1-x for significantly boosting water-gas shift reaction

Nature Communications Xing-Chi Li, Jun-Hao Wang, Tao-Tao Huang et al. Jan 16, 2025 DOI: 10.1038/s41467-025-56161-w

Factors associated with quality of life of chronic spontaneous urticaria patients in a Vietnamese population

PLoS ONE Nguyen Thi Tra My, Le Huyen My, Vu Nguyet Minh et al. Jan 16, 2025 DOI: 10.1371/journal.pone.0317499

Objective Chronic spontaneous urticaria (CSU) is a challenging condition that significantly impacts the affected patients. This study aimed to evaluate the quality of life (QoL) among patients with CSU in Vietnam and identify factors associated with QoL. Methods A cross-sectional study was conducted at the Vietnam National Dermatology and Venereology Hospital from June 2023 to March 2024. A total of 358 CSU patients aged 16 years or older were recruited. Data were collected using a structured questionnaire covering demographic, clinical, and laboratory characteristics. The Chronic Urticaria Quality of Life Questionnaire (CU-Q2oL) and the Weekly Urticaria Activity Score (UAS7) were utilized to assess QoL and disease severity. Multivariate Tobit regression models were performed. Results The CU-Q2oL total score had a mean of 48.67 (SD = 16.90) and a median of 46 (IQR = 35–59). The scores for individual CU-QoL subscales were as follows: pruritus (5.42±2.02), swelling (2.86±1.54), life activities (13.89±6.00), sleep problems (11.12±4.96), limits (6.52±2.66), and looks (8.85±4.09). Higher UAS7 scores were associated with lower QoL, and angioedema in the eyes and lips were associated with increased swelling domain and poorer overall QoL. Longer disease duration was associated with higher pruritus scores, while a history of allergy was related to poorer total QoL, sleep, and looks. Severe itching further degraded sleep quality. Positive Autologous Serum Skin Test (ASST) was correlated with lower overall QoL, particularly in swelling and limits domains. Positive Basophil Histamine Release Assay (BHRA) status was linked to poorer sleep quality domain. Conclusion CSU significantly impairs the QoL of patients, affecting physical, emotional, and social dimensions. Regular QoL assessments should be integrated into clinical practice to ensure comprehensive and patient-centered treatment strategies.

Herpesviruses mimic zygotic genome activation to promote viral replication

Nature Communications Eva Neugebauer, Stephanie Walter, Jiang Tan et al. Jan 16, 2025 DOI: 10.1038/s41467-025-55928-5

Abstract Zygotic genome activation (ZGA) is crucial for maternal to zygotic transition at the 2-8-cell stage in order to overcome silencing of genes and enable transcription from the zygotic genome. In humans, ZGA is induced by DUX4, a pioneer factor that drives expression of downstream germline-specific genes and retroelements. Here we show that herpesviruses from all subfamilies, papillomaviruses and Merkel cell polyomavirus actively induce DUX4 expression to promote viral transcription and replication. Analysis of single-cell sequencing data sets from patients shows that viral DUX4 activation is of relevance in vivo. Herpes-simplex virus 1 (HSV-1) immediate early proteins directly induce expression of DUX4 and its target genes, which mimics zygotic genome activation. Upon HSV-1 infection, DUX4 directly binds to the viral genome and promotes viral transcription. DUX4 is functionally required for infection, since genetic depletion by CRISPR/Cas9 as well as degradation of DUX4 by nanobody constructs abrogates HSV-1 replication. Our results show that DNA viruses including herpesviruses mimic an embryonic-like transcriptional program that prevents epigenetic silencing of the viral genome and facilitates herpesviral gene expression.

Cellular senescence-associated genes in rheumatoid arthritis: Identification and functional analysis

PLoS ONE You Ao, Qing Lan, Tianhua Yu et al. Jan 16, 2025 DOI: 10.1371/journal.pone.0317364

Rheumatoid arthritis (RA), a long-term autoinflammatory condition causing joint damage and deformities, involves a multifaceted pathogenesis with genetic, epigenetic, and immune factors, including early immune aging. However, its precise cause remains elusive. Cellular senescence, a hallmark of aging marked by a permanent halt in cell division due to damage and stress, is crucial in aging and related diseases. In our study, we analyzed RA microarray data from the Gene Expression Omnibus (GEO) and focused on cellular senescence genes from the CellAge database. We started by selecting five RA datasets from GEO. Next, we pinpointed 29 differentially expressed genes (DEGs) linked to cellular senescence in RA, aligning them with genes from CellAge. We explored the roles of these DEGs in cellular senescence through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. We then pinpointed three key genes (DHX9, CYR61, and ITGB) using random forest and LASSO Cox regression machine learning techniques. An integrated diagnostic model was created using these genes. We also examined the variance in immune cell infiltration and immune checkpoint gene expression between RA and normal samples. Our methodology’s predictive accuracy was confirmed in external validation cohorts. Subsequently, RA samples were classified into three distinct subgroups based on the cellular senescence-associated DEGs, and we compared their immune landscapes. Our findings reveal a significant impact of cellular senescence-related DEGs on immune cell infiltration in RA samples. Hence, a deeper understanding of cellular senescence in RA could offer new perspectives for diagnosis and treatment.

Changes in event soil moisture-temperature coupling can intensify very extreme heat beyond expectations

Nature Communications Douglas Maraun, Reinhard Schiemann, Albert Ossó et al. Jan 16, 2025 DOI: 10.1038/s41467-025-56109-0

The gender gap in STEM: (Female) teenagers’ ICT skills and subsequent career paths

PLoS ONE Friederike Hertweck, Judith Lehner Jan 16, 2025 DOI: 10.1371/journal.pone.0308074

Skills shortage in the fields of Sciences, Technology, Engineering, and Mathematics (STEM) poses a significant challenge for industries globally. To overcome shortage of STEM talent, the selection into STEM fields must be fully understood. We contribute to existing research on the selection of STEM careers by analysing the interplay between teenagers’ proficiency in Information and Communication Technology (ICT) and their career preferences in the STEM domain. Based on representative data for German teenagers, our study shows that female teenagers are less likely to choose a career in STEM unless they have strong ICT skills in secondary school. The relationship does not hold for male students. An increase in girls’ ICT skills by 10 percentage points in ninth grade is associated with an increase in the probability to choose a STEM career by 2.95 percentage points. Our findings can be explained with evidence that teenagers sort into occupations they believe to be good at and that female teenagers rather underestimate their true potential. Using different empirical approaches, we also show that ICT skills act as a moderator and not as a mediator in the gender-specific choice of training upon graduating from secondary school. By addressing the interplay between gender, ICT skills, and educational choices, the present study uncovers an additional lever of how to mitigate skills shortage in STEM.

Electrochromism via reversible electrodeposition of solid iodine

Nature Communications Shanlin Li, Yingyu Chen, Zhen Wang et al. Jan 16, 2025 DOI: 10.1038/s41467-024-55348-x

Single-cell and bulk RNA sequencing analysis reveals CENPA as a potential biomarker and therapeutic target in cancers

PLoS ONE Hengrui Liu, Miray Karsidag, Kunwer Chhatwal et al. Jan 16, 2025 DOI: 10.1371/journal.pone.0314745

Background Cancer remains one of the most significant public health challenges worldwide. A widely recognized hallmark of cancer is the ability to sustain proliferative signaling, which is closely tied to various cell cycle processes. Centromere Protein A (CENPA), a variant of the standard histone H3, is crucial for selective chromosome segregation during the cell cycle. Despite its importance, a comprehensive pan-cancer bioinformatic analysis of CENPA has not yet been conducted. Methods Data on genomes, transcriptomes, and clinical information were retrieved from publicly accessible databases. We analyzed CENPA’s genetic alterations, mRNA expression, functional enrichment, association with stemness, mutations, expression across cell populations and cellular locations, link to the cell cycle, impact on survival, and its relationship with the immune microenvironment. Additionally, a prognostic model for glioma patients was developed to demonstrate CENPA’s potential as a biomarker. Furthermore, drugs targeting CENPA in cancer cells were identified and predicted using drug sensitivity correlations and protein-ligand docking. Results CENPA exhibited low levels of gene mutation across various cancers. It was found to be overexpressed in nearly all cancer types analyzed in TCGA, relative to normal controls, and was predominantly located in the nucleus of malignant cells. CENPA showed a strong association with the cancer cell cycle, particularly as a biomarker for the G2 phase. It also emerged as a valuable diagnostic and prognostic biomarker across multiple cancer types. In glioma, CENPA demonstrated reliable prognostic potential when used alongside other prognostic factors. Additionally, CENPA was linked to the immune microenvironment. Drugs such as CD-437, 3-Cl-AHPC, Trametinib, BI-2536, and GSK461364 were predicted to target CENPA in cancer cells. Conclusion CENPA serves as a crucial biomarker for the cell cycle in cancers, offering both diagnostic and prognostic value.

Striving for open-source and equitable speech-to-speech translation

Nature Tanel Alumäe, Allison Koenecke Jan 16, 2025 DOI: 10.1038/d41586-024-04095-6

Gypsum heterogenous nucleation pathways regulated by surface functional groups and hydrophobicity

Nature Communications Yan-Fang Guan, Xiang-Yu Hong, Vasiliki Karanikola et al. Jan 16, 2025 DOI: 10.1038/s41467-025-55993-w

Abstract Gypsum (CaSO4·2H2O) plays a critical role in numerous natural and industrial processes. Nevertheless, the underlying mechanisms governing the formation of gypsum crystals on surfaces with diverse chemical properties remain poorly understood due to a lack of sufficient temporal-spatial resolution. Herein, we use in situ microscopy to investigate the real-time gypsum nucleation on self-assembled monolayers (SAMs) terminated with −CH3, −hybrid (a combination of NH2 and COOH), −COOH, −SO3, −NH3, and −OH functional groups. We report that the rate of gypsum formation is regulated by the surface functional groups and hydrophobicity, in the order of −CH3 > −hybrid > −COOH > −SO3 ≈ − NH3 > − OH. Results based on classical nucleation theory and molecular dynamics simulations reveal that nucleation pathways for hydrophilic surfaces involve surface-induced nucleation, with ion adsorption sites (i.e., functional groups) serving as anchors to facilitate the growth of vertically oriented clusters. Conversely, hydrophobic surfaces involve bulk nucleation with ions near the surface that coalesce into larger horizontal clusters. These findings provide new insights into the spatial and temporal characteristics of gypsum formation on various surfaces and highlight the significance of surface functional groups and hydrophobicity in governing gypsum formation mechanisms, while also acknowledging the possibility of alternative nucleation pathways due to the limitations of experimental techniques.

The diagnostic accuracy of umbilical cord procalcitonin in predicting early-onset neonatal infection

PLoS ONE Thi Thanh Binh Nguyen, Diep Anh Truong Thi, Quang Vinh Truong et al. Jan 16, 2025 DOI: 10.1371/journal.pone.0316987

Introduction To determine the threshold of umbilical cord blood procalcitonin for early-onset neonatal infection diagnosis. Method This prospective study was conducted on 126 neonates in the neonatal care unit of Hue University of Medicine and Pharmacy Hospital, Vietnam, from June 01, 2023 to August 31, 2024. All neonates showed signs at birth or risk factors for early-onset infection (EOI) and were divided into two groups: EOI group and non-EOI group. Umbilical cord blood samples were collected for procalcitonin analysis immediately after birth. Results The median procalcitonin (PCT) levels in umbilical cord blood were significantly higher in the EOI group (0.154 ng/ml [0.092–0.197]) compared to the non-EOI group (0.097 ng/ml [0.082–0.134]; p < 0.001). Receiver operating characteristic (ROC) curve determined the optimal threshold value of PCT of 0.142 ng/ml with an AUC 0.751 (95% CI: 0.661–0.841, p<0.001) in the total population. At this cut-off, the Se, Sp, PPV, and NPV were 68.2%, 76.8%, 61.2%, and 81.8%, respectively. The optimal cut-off value for preterm neonates was 0.122 ng/ml (AUC: 0.785, 95% CI: 0.658–0.911, p<0.001) corresponding a Se of 79.2%, Sp of 74.1%, PPV of 73.1%, and NPV of 80.0%. In term group, the optimal cut-off value was 0.150 ng/ml (AUC: 0.726, 95% CI: 0.583–0.860, p<0.01), with a Se of 60.0%, Sp of 80.4%, PPV of 52.2%, and NPV of 84.9%. Conclusions Umbilical cord blood PCT concentration were elevated in neonates with EOI. PCT could be a valuable marker for the early diagnosis of EOI.