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Field-scale detection of Bacterial Leaf Blight in rice based on UAV multispectral imaging and deep learning frameworks

PLoS ONE Guntaga Logavitool, Teerayut Horanont, Aakash Thapa et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0314535

Bacterial Leaf Blight (BLB) usually attacks rice in the flowering stage and can cause yield losses of up to 50% in severely infected fields. The resulting yield losses severely impact farmers, necessitating compensation from the regulatory authorities. This study introduces a new pipeline specifically designed for detecting BLB in rice fields using unmanned aerial vehicle (UAV) imagery. Employing the U-Net architecture with a ResNet-101 backbone, we explore three band combinations—multispectral, multispectral+NDVI, and multispectral+NDRE—to achieve superior segmentation accuracy. Due to the lack of suitable UAV-based datasets for rice disease, we generate our own dataset through disease inoculation techniques in experimental paddy fields. The dataset is increased using data augmentation and patch extraction methods to improve training robustness. Our findings demonstrate that the U-Net model incorporating ResNet-101 backbone trained with multispectral+NDVI data significantly outperforms other band combinations, achieving high accuracy metrics, including mean Intersection over Union (mIoU) of up to 97.20%, mean accuracy of up to 99.42%, mean F1-score of up to 98.56%, mean Precision of 97.97%, and mean Recall of 99.16%. Additionally, this approach efficiently segments healthy rice from other classes, minimizing misclassification and improving disease severity assessment. Therefore, the experiment concludes that the accurate mapping of the disease extent and severity level in the field is reliable to accurately allocating the compensation. The developed methodology has the potential for broader application in diagnosing other rice diseases, such as Blast, Bacterial Panicle Blight, and Sheath Blight, and could significantly enhance agricultural management through accurate damage mapping and yield loss estimation.

Central venous pressure as a method of optimising atrio-ventricular delay after cardiac surgery

PLoS ONE Alexander Tindale, Ioana Cretu, Naomi Gomez et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0310905

Introduction Haemodynamic atrioventricular delay (AVD) optimisation has primarily focussed on signals that are not easy to acquire from a pacing system itself, such as invasive left ventricular catheterisation or arterial blood pressure (ABP). In this study, standard clinical central venous pressure (CVP) signals are tested as a potential alternative. Methods Sixteen patients with a temporary pacemaker after cardiac surgery were studied. AV delay optimisation was performed by alternating between a reference AVD of 120ms and tested settings ranging from 40 to 280ms, with 8 replicates for each setting. Alongside (a) the raw data, three methods of correcting for respiration were tested: (b) limiting analysis to a respiratory cycle, (c) asymmetric least squares (ALS) and (d) discrete wavelet transform (DWT). The utility of a quality control step was tested. Results CVP signals were a mirror image of the systolic ABP signals: The four R values were -0.674, -0.692, -0.631, -0.671 respectively (all p<0.001). With quality control, the mirror image was best for DWT (R = -0.76, p<0.001), with the CVP and ABP optima agreeing well (R = 0.78, p<0.001). The automated quality control signal correctly predicted the gap between the AVD optima calculated from ABP and CVP (R = 0.8, p<0.001). Conclusions Central venous pressure signals could be used to optimise AVD, because they have a reliable inverse relationship with ABP when pacemaker settings undergo protocolised testing. However, protocols need careful design to circumvent spontaneous biological variability.

Exploring the impact of grazing on fecal and soil microbiome dynamics in small ruminants in organic crop-livestock integration systems

PLoS ONE Sejin Cheong, Kimberly Aguirre-Siliezar, Sequoia R. Williams et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0316616

In integrated crop-livestock systems, livestock graze on cover crops and deposit raw manure onto fields to improve soil health and fertility. However, enteric pathogens shed by grazing animals may be associated with foodborne pathogen contamination of produce influenced by fecal-soil microbial interactions. We analyzed 300 fecal samples (148 from sheep and 152 from goats) and 415 soil samples (272 from California and 143 from Minnesota) to investigate the effects of grazing and the presence of non-O157 Shiga toxin-producing Escherichia coli (STEC) or generic E. coli (gEc) in fecal and soil microbiomes. We collected samples from field trials of three treatments (fallow, a cover crop without grazing (non-graze CC), and a cover crop with grazing (graze CC)) grazed by sheep or goats between 2020 and 2022. No significant differences in non-O157 STEC prevalence were found between pre- and post-grazing fecal samples in either sheep or goats. However, gEc was more prevalent in graze CC soils compared to fallow or non-graze CC soils. Alpha diversity was influenced by the species of grazing animals and the region, as sheep fecal samples and soil from the California trials had greater alpha diversity than goat fecal samples and soil from the Minnesota trials. Beta diversity in sheep fecal samples differed by the presence or absence of non-O157 STEC, while in goat fecal samples, it differed between pre- and post-grazing events. Actinobacteria was negatively associated with non-O157 STEC presence in sheep fecal samples and decreased in post-grazing goat fecal samples. Grazing did not significantly affect soil microbial diversity or composition, and no interaction was observed between post-grazing fecal samples and the graze CC soil. The results suggest that soil contamination by foodborne pathogens and microbiome dynamics in ICLS are influenced by grazing animal species and regional factors, with interactions between fecal and soil microbial communities having minimal impact.

Food groups, macronutrient intake and objective measures of total carotenoids and fatty acids in 16-to-24-year-olds following different plant-based diets compared to an omnivorous diet

PLoS ONE Synne Groufh-Jacobsen, Christel Larsson, Isabelle Mulkerrins et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0311118

Background Knowledge about the diet quality among youth who follow different types of plant-based diets is essential to understand whether support is required to ensure a well-planned diet that meets their nutritional needs. This study aimed to investigate how food groups, macronutrient intake, and objective blood measures varied between Norwegian youth following different plant-based diets compared to omnivorous diet. Methods Cross-sectional design, with healthy 16-to-24-year-olds (n = 165) recruited from the Agder area in Norway, following a vegan, lacto-ovo-vegetarian, pescatarian, flexitarian or omnivore diet. Participants completed an electronic questionnaire, a dietary screener, 24-hour dietary recalls and provided dried blood samples for analysis of carotenoids and fatty acids. Results Vegans reported the highest mean intake (g/d, g/MJ) of vegetables, legumes, nuts and seeds and substitutes to dairy and meat (compared to all, p<0.001), fruit and berries (compared to omnivores, p = 0.004 and pescatarians, p = 0.007), and vegetable oil (compared to omnivores, p<0.001, pescatarians, p = 0.003 and flexitarians, p = 0.004) and vegetable products (compared to omnivores, p = 0.007). No difference was found between groups in mean intake (g/d, g/MJ) of any of the confectionary foods or sweet pastries, beverages (sugar-sweetened, non-sugary, alcoholic), or salted snacks, neither in g/MJ of convenience foods. The energy percentage (E%) of protein, carbohydrates and total fat were within the Nordic Nutrition Recommendations 2023 across groups. However, all groups, except vegans, exceeded the E% for saturated fatty acids. All groups exceeded recommendations for added and free sugar. Furthermore, all groups consumed <25g/d of dietary fibre, except vegans and pescatarians. For omega-3, lacto-ovo-vegetarians had intakes below recommendations. Blood marker of total carotenoids did not differ between groups, neither did the reported mean intake (g/MJ) of carotenoid-rich foods. Vegans showed the lowest blood level of palmitic acid compared to all (p<0.001), but highest level of linoleic acid (compared to flexitarians, p = 0.022, and omnivores, p<0.001). The lowest blood levels of eicosapentaenoic acid and docosahexaenoic acid were found in vegans and lacto-ovo-vegetarians. Conclusions Our findings suggest that all groups had risk of dietary shortcomings. However, vegans consumed the most favorable diet. All groups should increase their consumption of vegetables, fruits and berries, and reduce their total sugar intake.

Retrospective evaluation of a novel ultrasound-based imaging analysis software for predicting radiofrequency ablation areas

PLoS ONE Masaya Sato, Ryosuke Tateishi, Yogev Zohar et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0317469

Objective This study aimed to introduce and evaluate a novel software-based system, BioTrace, designed for real-time monitoring of thermal ablation tissue damage during image-guided radiofrequency ablation for hepatocellular carcinoma (HCC). Methods BioTrace utilizes a proprietary algorithm to analyze the temporo-spatial behavior of thermal gas bubble activity during ablation, as seen in conventional B-mode ultrasound imaging. Its predictive accuracy was assessed by comparing the ablation zones it predicted with those annotated by radiologists using contrast-enhanced computed tomography (CECT) 24 hours post-treatment, considered the gold standard. The study included 20 liver tumors. Results The median tumor measurement along the major axis was 1.2 cm. The median Dice coefficient, Sensitivity, and Precision between BioTrace and CECT were 0.90, 0.91, and 0.91, respectively. The intraclass correlation showed excellent agreement in volume size between BioTrace and CECT findings (0.98). Conclusion BioTrace effectively generates an ablation damage prediction map based on real-time ultrasound imaging, accurately predicting the ablation zone as confirmed by 24-hour post-procedural CECT. This system has the potential to enhance the safety and efficacy of ablation procedures in clinical settings.

Is reflux hypersensitivity truly a functional gastrointestinal disorder? A retrospective cross-sectional study

PLoS ONE Yanping Wu, Siyu Liao, Tianyao Qu et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0316226

Background According to Rome IV, reflux hypersensitivity (RH) represents a novel form of functional esophageal disorder. This study was designed to compare the clinical features of three types of endoscopic-negative heartburn: RH, nonerosive reflux disease (NERD), and functional heartburn (FH). Methods Patients with heartburn in a medical center from 01/01/2017 to 10/31/2021 were included. This article presented a blinded retrospective analysis of 24 h MII–pH and HRM tracings from patients with NERD, RH, and FH to compare their clinical characteristics. Results A total of 118 patients were included in the study. There were no significant differences in age, sex, BMI, smoking status, or drinking history among RH, NERD and FH. Functional dyspepsia (FD) symptoms were more prone to exist in FH than in NERD (P < 0.05), whereas hiatal hernia was more prevalent in NERD and RH than in FH (P < 0.05). The incidence of anxiety and depression gradually increased in the NERD, RH, and FH groups (P >  0.05). The distal MNBI and PSPW index of the NERD and RH groups were lower than those of the FH group (P < 0.05). The distal MNBI showed good diagnostic potential. Conclusions Clear pathological alterations, which are distinct from those of other FGIDs, are observable in RH. It might be inappropriate to categorize RHs within FGIDs.

Integrative phylogenetic analysis of the genus Episoriculus (Mammalia: Eulipotyphla: Soricidae)

PLoS ONE Yingxun Liu, Xuming Wang, Tao Wan et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0299624

Shrews in the genus Episoriculus are among the least-known mammals in China, where representatives occur mainly in the Himalayan and Hengduan mountains. We sequence one mitochondrial and three nuclear genes from 77 individuals referable to this genus, collect morphometric data for five shape and 11 skull measurements from 56 specimens, and use museum collections and GenBank sequences to analyze phylogenetic relationships between this and related genera in an integrated molecular and morphometric approach. Whereas historically anywhere from two to eight species have been recognized in this genus, we conclude that six ( Episoriculus baileyi , E . caudatus , E . leucops , E . macrurus , E . sacratus , E . soluensis ) are valid. We dissent from recent systematic reviews of this genus and regard E . sacratus to be a valid taxon, E . umbrinus to be a subspecies of E . caudatus , and transfer E . fumidus to Pseudosoriculus . Our record of E . soluensis is the first for China, and expands the previously recognized distribution of this taxon from Nepal and NE India into the adjacent Yadong and Nyalam counties. One further undescribed Episoriculus taxon may exist in Xizang.

Artificial intelligence applied in identifying left ventricular walls in myocardial perfusion scintigraphy images: Pilot study

PLoS ONE Solange Amorim Nogueira, Fernanda Ambrogi B. Luz, Thiago Fellipe O. Camargo et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0312257

This paper proposes the use of artificial intelligence techniques, specifically the nnU-Net convolutional neural network, to improve the identification of left ventricular walls in images of myocardial perfusion scintigraphy, with the objective of improving the diagnosis and treatment of coronary artery disease. The methodology included data collection in a clinical environment, followed by data preparation and analysis using the 3D Slicer Platform for manual segmentation, and subsequently, the application of artificial intelligence models for automated segmentation, focusing on the efficiency of identifying the walls of the left ventricular. A total of 83 clinical routine exams were collected, each exam containing 50 slices, which is 4,150 images. The results demonstrate the efficiency of the proposed artificial intelligence model, with a Dice coefficient of 87% and an average Intersection over Union of 0.8, reflecting high agreement with the manual segmentations produced by experts and surpassing traditional interpretation methods. The internal and external validation of the model corroborates its future applicability in real clinical scenarios, offering a new perspective in the analysis of myocardial perfusion scintigraphy images. The integration of artificial intelligence into the process of analyzing myocardial perfusion scintigraphy images represents a significant advancement in diagnostic accuracy, promoting substantial improvements in the interpretation of medical images, and establishing a foundation for future research and clinical applications, such as artifact correction.

Development and laboratory evaluation of a novel IoT-based electric-driven metering system for high precision garlic planter

PLoS ONE Abdallah Elshawadfy Elwakeel, Ahmed Elbeltagi, Ahmed Z. Dewidar et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0317203

In order to address many issues, such as the inconsistent and unreliable seeding process in traditional mechanical garlic seed metering systems (SMS), as well as the lack of ability to monitor the effectiveness of the seeding, a highly accurate electric-driven metering system (EDMS) was developed and created specifically for garlic seed planters. This study provided a description of the overall structure and functioning principle, as well as an analysis of the mechanism for smooth transit and delivery. A combination of an infrared (IR) sensor, Arduino Mega board, stepper motor, speed sensor, and a Wi-Fi module was employed to operate the EDMS, as well as monitor and count the quantity of garlic seeds during the planting process and determine the qualified rate (QR) and missing rate (MR). A monitoring system of the planting quality of garlic seeds was created based on the IoT concept. Then, the performance of the EDMS was validated in a laboratory setting utilizing a bench test at six operating velocities of 10, 20, 30, 40, 50, and 60 rpm of the EDMS. The obtained results showed that the correlation coefficient between the actual and detected garlic seed using the garlic seed monitoring and counting system (GSMCS) was 0.9723. Additionally, the EDMS observed a maximum QR of 96.23% at an operating velocity of 20 rpm, with a standard division and standard error of 1.61030 and 0.72015, respectively. Additionally, the EDMS minimized the MR up to 3.77% at the same operating velocity, with standard division and standard error of 1.65325 and 0.73936, respectively. Furthermore, the results indicated a progressive increase in the QR and MQ standard errors as the EDMS’s operating velocity increased. Additionally, the sensor’s monitoring accuracy gradually declined with an increase in the operating speed of the EDMS. Finally, this study introduced a novel EDMS to garlic seed planters that was not used before. The developed EDMS and GSMCS are technical manuals for developing and designing monitoring systems capable of precisely measuring and identifying the rates of qualifying and missing garlic seed measurements.

The effects of lowering barometric pressure on pain behavior and the stress hormone in mice with neuropathic pain

PLoS ONE Yuki Terajima, Jun Sato, Hideaki Inagaki et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0317767

Background Lowering barometric pressure (LP) can exacerbate neuropathic pain. However, animal studies in this field are limited to a few conditions. Furthermore, although sympathetic involvement has been reported as a possible mechanism, whether the sympathetic nervous system is involved in the hypothalamic-pituitary-adrenal (HPA) axis remains unknown. To address these issues, we investigated LP-induced hyperalgesia by focusing on the cumulative effect of LP and measuring plasma corticosterone levels as a marker of HPA axis activation in mice. Methods Mice with chronic constriction injury (CCI) were used in this study. For behavioral tests, two types of LP stimulation were adopted: a single LP at 20 hPa (Single LP) and three consecutive LPs at 20 hPa (3LPs). Twelve mice were used for each protocol. The no-pressure-change protocol was used as the control. The mechanical sensitivity was tested before and after LP stimulation using von Frey filaments (vF). For corticosterone measurements, six CCI and six intact mice were exposed to 3LPs (CCI-3LPs and INT-3LPs), and another six CCI and six intact mice were exposed to the no-pressure-change protocol (CCI-NP and INT-NP). Blood samples were collected immediately after exposure. Plasma corticosterone levels were measured by ELISA. Results The number of paw elevations by vF before and after LP stimulation did not differ significantly in either the Single LP or the no-pressure-change protocol. For the 3LPs, the number of paw elevations after LP stimulation was significantly greater than before stimulation. Plasma corticosterone levels in the CCI-3LPs were significantly higher than those in CCI-NPs. In intact mice, there was no significant difference in plasma corticosterone levels between the INT-3LPs and INT-NPs. Conclusions LP has a cumulative effect on neuropathic pain. Hypothalamic-pituitary-adrenal axis activation may have an important relationship with LP-induced pain in mice.

Preparation and photoelectric properties of Si:B nanowires with thermal evaporation method

PLoS ONE Yang Feng, Ping Liang, Ziwen Xia et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0316576

We have successfully prepared a significant number of nanowires from non-toxic silicon sources. Compared to the SiO silicon source used in most other articles, our preparation method is much safer. It provides a simple and harmless new preparation method for the preparation of silicon nanowires. SiNWs (Silicon nanowires), as a novel type of nanomaterial, exhibit many outstanding properties, including the quantum confinement effect, quantum tunneling, Coulomb blocking effect, and exceptional electrical and optical properties. The study of SiNWs is therefore highly significant. In this paper, non-toxic SiO2 powder, Si powder, and B2O3 powder were utilized as raw materials to prepare SiNWs with diameters ranging from 30–60 nm and lengths from several hundred nanometers to tens of microns. The resulting SiNWs have a uniform morphology, smooth surfaces, and are produced in considerable yield. The morphology and structure of the SiNWs were characterized using XRD, SEM, HRTEM, SAED, EDS, and Raman spectroscopy. The results indicate that the prepared SiNWs are pure, uniform, and have a polycrystalline structure. The PL (photoluminescence) spectra show a pronounced UV emission peak at 346 nm, with the optimal excitation wavelength being 234 nm. Measurements with the Keithley 2601B demonstrate that the resistivity of the SiNWs is 4.292 × 108Ω·cm. Further studies reveal that the PL properties of SiNWs are influenced by their size and surface state. These findings have significant implications for understanding the luminescent mechanism of SiNWs and their potential applications in optoelectronics and biomedicine. This paper serves as a reference for the preparation and characterization of SiNWs, highlighting their PL properties and potential use in various applications, including biomedical imaging, sensors, and optoelectronic devices.

Design and fabrication of customized brain slice matrices using CAD and 3D printing technology

PLoS ONE Yosuke Yamazaki, Maki Yuguchi, Bin Honjo et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0317616

This study presents a novel method for creating customized brain slice matrices using Computer-Aided Design (CAD) and 3D printing technology. Brain Slice Matrices are essential jigs for the reproducible preparation of brain tissue sections in neuroscience research. Our approach leverages the advantages of 3D printing, including design flexibility, cost-effectiveness, and rapid prototyping, to produce custom-made brain matrices based on specific morphometric measurements. The developed protocol is user-friendly and incorporates features such as embossed identifying markers and support structures for challenging thin regions, thereby enhancing its practical utility. Our method demonstrates rapid and cost-effective fabrication of custom brain matrices, significantly reducing both material expenses and production time compared to traditional manufacturing techniques and ready-made products. This work contributes to the growing application of 3D printing in biomedical research, offering a valuable tool for neuroscientists requiring precise and consistent brain tissue sectioning.

Correction: Effects of nitrogen, phosphorus and potassium formula fertilization on the yield and berry quality of blueberry

PLoS ONE Xinyu Zhang, Shuangshuang Li, Xiaoli An et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0318032

Translation, adaptation and validation of an epilepsy screening instrument in two Ghanaian languages

PLoS ONE Emmanuel Kwame Darkwa, Sabina Asiamah, Elizabeth Awini et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0303735

Introduction The prevalence of epilepsy in sub-Saharan Africa varies considerably, and the exact estimate for Ghana remains unclear, particularly in peri-urban areas where data are scarce. More community-based studies are required to understand better the actual burden of epilepsy in these areas and the difficulties in accessing healthcare. Objective To adapt and validate a household survey epilepsy-screening instrument in Shai-Osudoku and Ningo-Prampram District of Greater Accra Region, Ghana. Methods We developed a 17-item epilepsy screening instrument by modifying previously validated English language questionnaires. We included questions that could identify convulsive and non-convulsive seizures. Language experts forward- and back-translated the questionnaires into the two languages: Asante Twi and Dangme. Cases were people with confirmed epilepsy attending healthcare facilities where these languages are used. Controls were unaffected relatives of cases or people attending the same healthcare facilities for other medical conditions. We matched cases and controls for geographical location and ethnicity. An affirmative response to one of the seventeen questions by a participant was deemed a positive screen. The questionnaires were divided into two stages. The first stage consisted of broader, more general questions aimed at identifying potential cases of epilepsy. The second stage involved a more detailed and focused set of questions administered to those who screened positive in the first stage. Results One hundred and forty Dangme speakers (70 cases and 70 controls) and 100 Asante Twi speakers (50 cases and 50 controls) were recruited. The sensitivity and specificity for Dangme were: Stage 1, 100% and 80%, and Stage 2, 98.6% and 85.7%. The Dangme version reliably identified epilepsy with positive predictive values of 83.3% and 87.3% at stages 1 and 2. The questionnaire excluded epilepsy with 100% and 98.4% negative predictive values. For the Asante Twi version, the sensitivity and specificity were 98% and 92% (95% at Stage 1, and for Stage 2, 96% and 94%. The Asante Twi questionnaire reliably specified epilepsy with positive predictive values of 92.5% and 94.1% at stages 1 and 2. It excluded epilepsy with negative predictive values of 97.9% and 95.9% for the two stages Conclusions Our questionnaire is valid for the two languages and usable for community-based epilepsy surveys in Ghana. It can also be adapted for other resource-poor settings, although translation and iterative in-country testing will be needed to ensure its validity.

Investigating the performance of multivariate LSTM models to predict the occurrence of Distributed Denial of Service (DDoS) attack

PLoS ONE Prashant Kumar, Chitra Kushwaha, Dimple Sethi et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0313930

In the current cybersecurity landscape, Distributed Denial of Service (DDoS) attacks have become a prevalent form of cybercrime. These attacks are relatively easy to execute but can cause significant disruption and damage to targeted systems and networks. Generally, attackers perform it to make reprisal but sometimes this issue can be authentic also. In this paper basically conversed about some deep learning models that will hand over a descent accuracy in prediction of DDoS attacks. This study evaluates various models, including Vanilla LSTM, Stacked LSTM, Deep Neural Networks (DNN), and other machine learning models such as Random Forest, AdaBoost, and Gaussian Naive Bayes to determine the DDoS attack along with comparing these approaches as well as perceiving which one is about to give elegant outcomes in prediction. The rationale for selecting Long Short-Term Memory (LSTM) networks for evaluation in our study is based on their proven effectiveness in modeling sequential and time-series data, which are inherent characteristics of network traffic and cybersecurity data. Here, a benchmark dataset named CICDDoS2019 is used that contains 88 features from which a handful (22) convenient features are extracted further deep learning models are applied. The result that is acquired here is significantly better than available techniques those are attainable in this context by using Machine Learning models, data mining techniques and some IOT based approaches. It’s not possible to completely avoid your server from these threats but by applying discussed techniques in the present juncture, these attacks can be prevented to an extent and it will also help to server to fulfil the genuine requests instead of sticking in the accomplishing the requests created by the unauthentic user.

Woody species diversity, structure and community distribution along environmental gradients of Seqela Dry Afromontane forest in Northwestern Ethiopia

PLoS ONE Liyew Birhanu, Getaneh Moges, Nigussie Amsalu et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0313020

Dry evergreen Afromontane forests are severely threatened due to the expansion of agriculture and overgrazing by livestock. The objective of this study was to investigate the composition of woody species, structure, regeneration status and plant communities in Seqela forest, as well as the relationship between plant community types and environmental variables. Systematic sampling was used to collect vegetation and environmental data from 52 (20 m x 20 m) (400 m2) plots. Density, Diameter at Breast Height (DBH), basal area, frequency, and importance value index (IVI) of woody species were computed to characterize the vegetation structure of the forest. Agglomerative hierarchical cluster analysis and Canonical Correspondence Analysis (CCA) with R software were used to identify plant communities and analyse the relationship between plant community types and environmental variables, respectively. A total of 68 woody plant species belonging to 63 genera and 44 families were identified. The Shannon diversity index and evenness values of the study area were 2.12 and 0.92, respectively. The total basal area and density of woody species were 27.4 m2 ha−1 and 1079.3 individual ha−1, respectively. The most frequent woody species in the Seqela forest included Albizia gummifera (51.92%), Croton macrostachyus (44.23%), Olinia rochetiana and Teclea nobilis (36.54%). Additionally, the most dominant species, as indicated by their importance value index (IVI), were Erythrina brucei (IVI = 11.24), Prunus africana (IVI=8.68), and Croton macrostachyus (IVI=7.38). Four plant community types were identified: Albizia gummifera - Ekebergia capensis, Prunus africana - Croton macrostachyus, Vachellia abyssinica - Dombeya torrida and Schefflera abyssinica - Teclea nobilis. The CCA results showed that the variation of species distribution and plant community formation were significantly (P < 0.05) related to altitude, organic matter, aspect, slope and soil available phosphorus. The regeneration status assessment of the forest revealed a good regeneration status, which was linked to diverse and abundant seed bank in the soil can ensure a continuous supply of seeds for regeneration; therefore, it is recommended to implement periodic soil seed bank assessments to monitor seed diversity and abundance and inform targeted conservation actions.

Exploring medical error taxonomies and human factors in simulation-based healthcare education

PLoS ONE Tamara Skrisovska, Daniel Schwarz, Martina Kosinova et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0317128

This study aims to provide an updated overview of medical error taxonomies by building on a robust review conducted in 2011. It seeks to identify the key characteristics of the most suitable taxonomy for use in high-fidelity simulation-based postgraduate courses in Critical Care. While many taxonomies are available, none seem to be explicitly designed for the unique context of healthcare simulation-based education, in which errors are regarded as essential learning opportunities. Rather than creating a new classification system, this study proposes integrating existing taxonomies to enhance their applicability in simulation training. Through data from surveys of participants and tutors in postgraduate simulation-based courses, this study provides an exploratory analysis of whether a generic or domain-specific taxonomy is more suitable for healthcare education. While a generic classification may cover a broad spectrum of errors, a domain-specific approach could be more relatable and practical for healthcare professionals in a given domain, potentially improving error-reporting rates. Seven strong links were identified in the reviewed classification systems. These correlations allowed the authors to propose various simulation training strategies to address the errors identified in both the classification systems. This approach focuses on error management and fostering a safety culture, aiming to reduce communication-related errors by introducing the principles of Crisis Resource Management, effective communication methods, and overall teamwork improvement. The gathered data contributes to a better understanding and training of the most prevalent medical errors, with significant correlations found between different medical error taxonomies, suggesting that addressing one can positively impact others. The study highlights the importance of simulation-based education in healthcare for error management and analysis.

Toll-like receptor 2/6-stimulated HMC-1 mast cells promote keratinocyte migration in wound healing

PLoS ONE Jiyun Kwon, Kyung-Ah Cho, So-Youn Woo Jan 17, 2025 DOI: 10.1371/journal.pone.0317766

Mast cells, immune sentinels that respond to various stimuli in barrier organs, provide defense by expressing pattern recognition receptors, such as Toll-like receptors (TLRs). They may affect inflammatory responses and wound healing. Here, we investigated the effect of TLR2/6-stimulated mast cells on wound healing in keratinocytes. The human mast cell line HMC-1 was treated with the TLR2/6 agonist FSL-1, and the conditioned medium (CM) was collected from untreated cells (HMC-1 CM) and FSL-1-stimulated cells (FSL-1-HMC-1 CM). Cell migration was evaluated in keratinocyte cells (HaCaT) treated with HMC-1 CM and FSL-1-HMC-1 CM via scratch and Transwell assays. Mice were treated with HMC-1 CM, FSL-1-HMC-1 CM, and FSL-1. Wound closure was measured, and tissue regeneration was assessed using hematoxylin and eosin staining. Growth factor expression levels were evaluated to identify the factors affecting wound healing. The tryptase inhibitor APC 366 was treated with HMC-1 CM and FSL-1-HMC-1 CM in a scratch assay. This study revealed that HMC-1 CM affected HaCaT cell migration, which was facilitated by FSL-1-HMC-1 CM. HMC-1 CM promoted tryptase-dependent HaCaT migration. Moreover, FSL-1-HMC-1 CM enhanced wound healing in C57BL/6J mice in vivo. Our findings indicated that TLR2/6-stimulated mast cells contributed to skin homeostasis by promoting tryptase-dependent wound healing.

Spontaneous oxycodone withdrawal disrupts sleep, diurnal, and electrophysiological dynamics in rats

PLoS ONE Michael Gulledge, William A. Carlezon, R. Kathryn McHugh et al. Jan 17, 2025 DOI: 10.1371/journal.pone.0312794

Opioid dependence is defined by an aversive withdrawal syndrome upon drug cessation that can motivate continued drug-taking, development of opioid use disorder, and precipitate relapse. An understudied but common opioid withdrawal symptom is disrupted sleep, reported as both insomnia and daytime sleepiness. Despite the prevalence and severity of sleep disturbances during opioid withdrawal, there is a gap in our understanding of their interactions. The goal of this study was to establish an in-depth, temporal signature of spontaneous oxycodone withdrawal effects on the diurnal composition of discrete sleep stages and the dynamic spectral properties of the electroencephalogram (EEG) signal in male rats. We continuously recorded EEG and electromyography (EMG) signals for 8 d of spontaneous withdrawal after a 14-d escalating-dose oxycodone regimen (0.5–8.0 mg/kg, 2×d; SC). During withdrawal, there was a profound loss (peaking on days 2–3) and gradual return of diurnal structure in sleep, body temperature, and locomotor activity, as well as decreased sleep and wake bout durations dependent on lights on/off. Withdrawal was associated with significant alterations in the slope of the aperiodic 1/f component of the EEG power spectrum, an established biomarker of arousal level. Early in withdrawal, NREM exhibited an acute flattening and return to baseline of both low (1–4 Hz) and high (15–50 Hz) frequency components of the 1/f spectrum. These findings suggest temporally dependent withdrawal effects on sleep, reflecting the complex way in which the allostatic forces of opioid withdrawal impinge upon sleep and diurnal processes. These foundational data based on continuous tracking of vigilance state, sleep stage composition, and spectral EEG properties provide a detailed construct with which to form and test hypotheses on the mechanisms of opioid-sleep interactions.

Correction: Integration of evidence into Theory of Change frameworks in the healthcare sector: A rapid systematic review

PLoS ONE Jan 17, 2025 DOI: 10.1371/journal.pone.0318028