Browse Articles

Efficacy of pre-harvest weed control treatments on onion bulb storability

Abstract Storage experiments were carried out, in 2019 and 2020, to evaluate the effect of pre-harvest weed control treatments on quality attributes and storability of onion bulbs during a six-month storage at room temperature (25 ± 5 °C and 50–60% relative humidity) in corrugated paper boxes. Weed control treatments consisted of the aqueous extracts of orange peel processing waste (OPPW) 20%, mango leaves waste (MLW) 30%, and olive oil processing waste (OOPW) 30%, alone or mixed with half a dose of oxyfluorfen herbicide (938 ml ha−1), soil mulching with orange peel processing waste, mango leaves, olive oil processing waste, and rice straw (OPPWM, OOPWM, MLW, and RSM, respectively) at 10 tons ha−1, hoeing, oxyfluorfen herbicide (at 938 and 1875 ml ha−1), and an unweeded control treatment. OPPW mulch and hoeing treatments were the most effective treatments in improving storability, decreasing weight loss and decay percentages of onion bulbs as well as maintaining bulb quality attributes, i.e., bulb firmness, dry matter, total soluble solids and total soluble sugars content during a six-months storage. It was concluded that using OPPW and MLW, as soil mulches or as aqueous extracts, for weed control within onion field, helps maintain onion bulb quality, and storability.

Global diversity and energy of animals shaping the Earth’s surface

The collective influence of animals on the processes shaping the Earth’s surface remains largely unknown, with most studies limited to individual species and well-known exemplars. To establish the global geomorphic significance of animals, we systematically reviewed and synthesized evidence across freshwater and terrestrial ecosystems. Over 600 animal taxa had reported geomorphic effects. For the 495 wild animals and 5 livestock identified to species level, we estimated their global abundance, and collective biomass and energy. While our census is global in scope, a lack of research in the tropics and subtropics, and on less visible animals, leaves them underrepresented in analyses. Most reported species are globally widespread, but some are rare, endemic, and/or threatened, leading to risks that key geomorphic processes cease before we fully understand them. We estimate the collective biomass in wild animal geomorphic agents at ≈0.2 Mt Carbon, equating to a biological energy content of ≈7.6 million GJ. If a conservative minimum 1% of this energy contributes to geomorphic work annually, this yields an energy contribution from wild animal geomorphic agents of ≈76,000 GJ—equivalent to the energy of hundreds of thousands of extreme floods. Uncertainties in biomass estimates and energy partitioning mean this value could credibly be an order of magnitude higher, and countless species remain unreported or undiscovered. The livestock estimates exceed the wild animals estimates by three orders of magnitude. The geomorphic energy of animals is far more influential than previously recognized and future losses, dispersal and introductions of zoogeomorphic species may induce substantive landscape changes.

Statistical inference of the generalized process capability index for the discrete lindley distribution

Illuminating an invisible state of the HIV-1 capsid protein CTD dimer using ¹⁹ F NMR and weighted ensemble simulations

The HIV-1 capsid protein (CA) assembles into a conical shell during viral maturation, encasing and protecting the viral RNA genome. The C-terminal domain (CTD) of the two-domain capsid protein dimerizes, and this dimer connects individual chains in the mature capsid lattice. Previous NMR studies have shown that different dimer arrangements can be formed by isolated capsid protein chains and in assembled capsid lattices; however, the dynamics and functional relevance of these alternate dimers are unknown. To explore the conformational landscape of the CA-CTD dimer, we carried out atomistic molecular dynamics simulations using the weighted ensemble path sampling strategy, generating an ensemble of conformations. Focusing on the two dimer forms previously observed via solution NMR, we refined the conformational ensemble to highlight two metastable states using a Markov state model. Experimentally, we measured the interconversion rates between the two alternate dimers using 19 F NMR, and these rates showed good agreement with the interconversion rates derived from the simulations. After identifying the key interactions that distinguish the dimer states, the alternate dimer was further experimentally verified through disulfide crosslinking. Our results demonstrate the advantages of pairing weighted ensemble path sampling with 19 F NMR to gain atomistic insights into the hidden dimer state of the HIV-1 capsid protein.

Multiomics in silico analysis identifies TM4SF4 as a cell surface target in hepatocellular carcinoma

The clinical application of cellular immunotherapy in hepatocellular carcinoma (HCC) is impeded by the lack of a cell surface target frequently expressed in HCC cells and with minimal presence in normal tissues to reduce on-target, off-tumor toxicity. To address this, an in silico multomics analysis was conducted to identify an optimal therapeutic target in HCC. A longlist of genes (n = 12,948) expressed in HCCs according to The Human Protein Atlas database were examined. Eight genes were shortlisted to identify one with the highest expression in HCCs, without being shed into circulation, and with restrictive expression profile in other normal human tissues. A total of eight genes were shortlisted and subsequently ranked according to the combination of their transcript and protein expression levels in HCC cases (n = 791) derived from four independent datasets. TM4SF4 was the top-ranked target with the highest expression in HCCs. TM4SF4 showed more favorable expression profile with significantly lower expression in normal human tissues but more highly expressed in HCC compared with seven other common HCC therapeutic targets. Furthermore, scRNA-seq and immunohistochemistry datasets showed that TM4SF4 was absent in immune cell populations but highly expressed in the bile duct canaliculi of hepatocytes, regions inaccessible to immune cells. In scRNA-seq dataset of HCCs, TM4SF4 expression was positively associated with mitochondrial components and oxidative phosphorylation Gene Ontologies in HCC cells (n = 15,787 cells), suggesting its potential roles in mitochondrial-mediated oncogenic effects in HCC. Taken together, TM4SF4 is proposed as a promising cell surface target in HCC due to its high expression in HCC cells with restricted expression profile in non-cancerous tissues, and association with HCC oncogenic pathways.

Enhancing resilience of distributed DC microgrids against cyber attacks using a transformer-based Kalman filter estimator

Fungal effector disables cathepsin-driven Toll immunity in insects

Plasma attenuates endothelial injury compared to crystalloids in a ventilated rat pneumosepsis model

Background The dysregulated immune response during sepsis involves endothelial injury, which may be augmented by infusion of clear fluids such as crystalloids. Plasma has been suggested as an alternative resuscitation fluid but it is unclear whether previously observed benefits were due to the type of fluid, or due to less volume required to restore tissue perfusion. We hypothesized that resuscitation with plasma reduces endothelial injury, inflammation, and organ injury compared to similar and higher volumes of crystalloids in a rat pneumosepsis model. Methods Rats were intratracheally inoculated with Streptococcus Pneumoniae to induce pneumosepsis. Twenty-four hours after inoculation, animals were randomized to 4 groups: healthy controls (non-resuscitated, n = 6), 10 ml/kg/hr (standard-volume, n = 11) crystalloid resuscitation, 3.33 ml/kg/hr (low-volume, n = 11) crystalloid resuscitation or 3.33 ml/kg/hr plasma resuscitation (n = 11). Plasma markers of inflammation and endothelial injury were measured. Organs were harvested for histology and wet-to-dry weight ratio determination. Results Inoculated animals developed pneumosepsis, with lower mean arterial pressures (p < 0.001) and higher lactate levels (p < 0.001) compared to healthy controls. Animals resuscitated with plasma showed a trend towards lower syndecan-1 levels compared to the standard-volume crystalloid group (82 vs 99 ng/mL, p = 0.06) and had lower levels of VCAM-1 (424 vs 592 ng/mL, p < 0.01) compared to the standard volume crystalloid group, but not when compared to the low-volume crystalloid group. Other markers of endothelial injury or inflammation were not significantly different between groups. No significant differences were observed in histologic injury scores and wet-to-dry ratios. Conclusion Plasma resuscitation modestly reduces endothelial injury compared to crystalloid resuscitation. This effect might be attributed to decreased resuscitation volumes rather than the type of fluid.

Sleep and stress in athletes with disabilities around the 2021 Tokyo Paralympic games during the pandemic

Extensive location bias of the GPCR-dependent translatome via site-selective activation of mTOR

G protein–coupled receptors (GPCRs) modulate various physiological functions by rewiring cellular gene expression in response to extracellular signals. Control of gene expression by GPCRs has been studied almost exclusively at the transcriptional level, neglecting an extensive amount of regulation that takes place translationally. Hence, little is known about the nature and mechanisms of gene-specific posttranscriptional regulation downstream of receptor activation. Here, we apply an unbiased multiomics approach to delineate an extensive translational regulatory program initiated by the prototypical beta2-adrenergic receptor (β2-AR) and provide mechanistic insights into how these processes are orchestrated. Using ribosome profiling (Ribo-seq), we identify nearly 120 gene targets of adrenergic receptor activity for which expression is exclusively regulated at the level of translation. We next show that all translational changes are induced selectively by endosomal β2-ARs and report that this proceeds through activation of the mammalian target of rapamycin (mTOR) pathway. Specifically, within the set of translational GPCR targets, we find significant enrichment of genes with 5’ terminal oligopyrimidine (TOP) motifs, a gene class classically known to be translationally regulated by mTOR. We then demonstrate that endosomal β2-ARs are required for mTOR activation and subsequent mTOR-dependent TOP mRNA translation. This site-selective crosstalk between the pathways is observed in multiple cell models with native β2-ARs, across a range of endogenous and synthetic adrenergic agonists, and for other GPCRs with intracellular activity. Together, this comprehensive analysis of drug-induced translational regulation establishes a critical role for location-biased GPCR signaling in fine-tuning the cellular protein landscape.

Transcriptomic adaptation of skeletal muscle in response to MICT and HIIT exercise modalities

Skeletal muscle exhibits remarkable plasticity in response to diverse stimuli, with exercise serving as a potent trigger. Varied exercise modalities, including moderate-intensity continuous training (MICT) and high-intensity interval training (HIIT), induce distinct structural and functional adaptations on skeletal muscle. However, the underlying molecular mechanisms governing these adaptations remain poorly understood. In this study, we utilized RNA-seq to characterize the transcriptomic profile of murine gastrocnemius muscle following 8-week treadmill-based MICT (M group) and HIIT (H group). A total of 1052 DEGs were screened in H vs. M. Among the top 10 significant DEGs, Foxo1 and Myod1 are closely related to muscular physiology. Through KEGG pathway analysis, distinct adaptations were primarily identified in the FoxO, MAPK, and PI3K-AKT pathways. By analyzing the expression of myokines, a significantly higher Igf-1 expression level was observed in the M group compared to the H group. Therefore, IGF-1, a well-known upstream regulator of both the PI3K-AKT-FoxO and MAPK pathways, might drive distinct muscle adaptations through variations in Igf-1 expression induced by these two exercise modalities.

Publisher Correction: Study on performance of perforated dew point indirect evaporative coolers

Viral circular RNA–encoded protein, ceVP28, divulges an antiviral response in invertebrates

Invertebrates mostly use innate immunity to counteract pathogenic infections. In this study, shrimp was used as a model organism to explore the functions of circular RNAs (circRNAs) derived from white spot syndrome virus (WSSV). We identified four viral circRNAs, termed circWSSV147, circWSSV326, circWSSV458, and circVP28, from transcriptomic data of WSSV-infected shrimp. CircVP28, which contains an internal ribosome entry site, was further characterized to determine its potential as a template for protein translation. We observed the presence of a truncated, circRNA-encoded VP28 (ceVP28) in infected shrimp. Both ceVP28 and its parental counterpart, VP28, share the same host cell binding partner Rab7, which is a host receptor for WSSV. Coadministration of recombinant ceVP28 protein and WSSV to penaeid shrimps reduced both viral copy numbers and mortality upon WSSV challenges. These findings uncovered a host defense mechanism by which a protein encoded by a viral circRNA modulates virus–receptor interactions, resulting in blocking of viral entry.

Chemical composition and biological activity of lemongrass volatile oil and n-Hexane extract: GC/MS analysis, in vitro and molecular modelling studies

Lemon grass, formally identified as Cymbopogon citratus, is a plant that belongs to the Poaceae family. The present work aimed to examine the chemical composition by GC/MS analysis and assess the biological potential of C. citratus volatile oil and n-hexane extract. The volatile oil and n-hexane extract were evaluated for antioxidant potential and tested for their enzyme inhibition against tyrosinase, butyrylcholinesterase (BChE), acetylcholinesterase (AChE), α-amylase, and α-glucosidase. The chemical analysis of the lemongrass n-hexane extract (HE) and volatile oil (VO) revealed that the main constituents in the HE are aliphatic hydrocarbons (42.98%), triterpenoids (20.14%), and aromatic hydrocarbons (17.25%). Conversely, the main constituents of the (VO) are predominantly monoterpenes, namely α-citral (36.08%), β-citral (34.22%), and β-myrcene (13.84%). The oil showed more potent antioxidant potential in DPPH, ABTS, CUPRAC, FRAP, and phosphomolybdenum (10.18, 35.69 mg Trolox equivalent/g, 98.97 and 69.73 mg Trolox equivalent/g and 43.01 mmol Trolox equivalent/g). The HE displayed higher BChE (1.53 mg Galanthamine equivalent)/g), as well as α-amylase and α-glucosidase inhibitory activities (0.39 and 2.40 mmol Acarbose equivalent/g). The VO demonstrated more potent tyrosinase inhibitory activities (57.19 mg Kojic acid equivalent/g) along with acetyl and butyrylcholinesterase inhibition. Dominant compounds exhibited the ability to bind with high affinity to various target proteins, with a particular affinity for AChE and BChE. The volatile oil and n-hexane extract of C. citratus show significant promise as a viable choice for the advancement of novel therapeutic strategies aimed at addressing oxidative stress, neurodegeneration, and diabetes.

Optimizing black cattle tracking in complex open ranch environments using YOLOv8 embedded multi-camera system

Independent effects of the human circadian system and sleep/eating cycles on caloric intake in adolescents vary by weight status

Late-day eating is linked to increased obesity risk; however, whether the endogenous circadian system independently influences caloric intake and if this control differs among individuals based on weight status is unknown. Here, we investigated in adolescents the independent roles of the endogenous circadian system and of the behavioral sleep/wake cycle (sleep/wake, fasting/eating, rest/activity, dark/dim light, social interaction, posture, etc.) on self-selected caloric intake using a Forced Desynchrony protocol. Fifty-one male and female adolescents across three weight status categories (24 with healthy weight, 13 with overweight, and 14 with obesity) completed the protocol where participants lived on seven 28-h sleep/wake cycles in dim light during wake and complete darkness during sleep. Results suggest that the circadian system and the behavioral cycle each affected caloric intake, with a decrease across the wake episode and an increase from circadian morning to circadian evening in caloric intake. The endogenous circadian rhythm in caloric intake showed a circadian peak-to-trough difference of 196 [CI 95% 164, 226] kcal per meal with peak timing of 296° [288°, 304°; equivalent to ~17:30 in these participants]. In those with overweight/obesity, more calories were consumed later in the waking episode and later in the circadian cycle, and with blunted amplitudes compared to those with healthy weight. Results implicate both the endogenous circadian system and the behavioral cycle in shaping the daily rhythm of food intake. Furthermore, these results help explain the increased drive for caloric intake toward the evening, especially in those at risk for obesity.

Differential expression and modulation of EBI2 and 7α,25-OHC synthesizing (CH25H, CYP7B1) and degrading (HSD3B7) enzymes in mouse and human brain vascular cells

The endogenous ligand for the EBI2 receptor, oxysterol 7α,25OHC, crucial for immune responses, is finely regulated by CH25H, CYP7B1 and HSD3B7 enzymes. Lymphoid stromal cells and follicular dendritic cells within T cell follicles maintain a gradient of 7α,25OHC, with stromal cells increasing and dendritic cells decreasing its concentration. This gradient is pivotal for proper B cell positioning in lymphoid tissue. In the animal model of multiple sclerosis, the experimental autoimmune encephalomyelitis, the levels of 7α,25OHC rapidly increase in the central nervous system driving the migration of EBI2 expressing immune cells through the blood-brain barrier (BBB). To explore if blood vessel cells in the brain express these enzymes, we examined normal mouse brain microvessels and studied changes in their expression during inflammation. Ebi2 was abundantly expressed in endothelial cells, pericytes/smooth muscle cells, and astrocytic endfeet. Ch25h, Cyp7b1, and Hsd3b7 were variably detected in each cell type, suggesting their active involvement in oxysterol 7α,25OHC synthesis and gradient maintenance under normal conditions. Significant species-specific differences emerged in EBI2 and the enzyme levels between mouse and human BBB-forming cells. Under acute inflammatory conditions, Ebi2 and synthesizing enzyme modulation occurred in the brain, with the magnitude and direction of change based on the enzyme. Lastly, in an in vitro astrocyte migration model, CYP7B1 inhibitor clotrimazole, as well as EBI2 antagonist, NIBR189, inhibited lipopolysaccharide-induced cell migration indicating the involvement of EBI2 and its ligand in brain cell migration under inflammatory conditions.

Relationship between serum homocysteine, folate and vitamin B12 levels and cognitive function in patients with drug-naive obsessive-compulsive disorder

Modeling energy requirements for oxygen production on the Moon

Spacecraft using combustion engines require substantial amounts of oxygen for their propellant. The Moon could be a source of oxygen for rocket propellant, since the material composing the lunar surface can be processed to extract oxygen. However, little is known about overall energy requirements of the processes described in the literature for oxygen extraction from lunar regolith. This knowledge gap constrains the planning of lunar missions, since the scale of energy infrastructure required for oxygen production facilities is not well characterized. This study presents an energy consumption model for oxygen production via hydrogen reduction of the mineral ilmenite (FeTiO 3 ). We consider an end-to-end production chain starting from dry regolith as the feedstock. The production includes the following process steps: excavation, transportation, beneficiation, hydrogen reduction, water electrolysis, liquefaction, and zero boil-off storage. The model predicts the energy demand per kilogram oxygen produced based on adjustable parameters for each process step. As expected, the model indicates a strong dependence on feedstock composition. For regolith composed of 10 wt% ilmenite, the model predicts that a total of 24.3 (± 5.8) kWh is needed per kg of liquid oxygen produced. This study confirms that the hydrogen reduction and electrolysis steps have the highest energy requirements in the production chain. Sensitivity analysis reveals that the enrichment factor of the beneficiation process is the most critical parameter for optimizing energy utilization. Overall, this study provides a parameterized end-to-end model of energy consumption that can serve as a foundation for various production systems on the Moon.

Co-representation breaks down beyond the dyad in UK adults

Cooperation is so deeply embedded in human psychology that we spontaneously track a partner’s task as well as our own when acting in a pair. This automatic ‘co-representation’ of a partner’s mental representation of their task has been argued to be key to the sophisticated social coordination we see in human adults. However, our day-to-day encounters are not limited to one-to-one interactions. This is the first published study to investigate co-representation in groups, with results from a group Joint Simon task suggesting that co-representation may break down in groups larger than two. Exploratory analyses also suggested a complex interplay between spatial and social relationships between individual members within a group. We propose a novel hypothesis based on these findings: when we lack the capacity to track everyone in a group, we may be able to selectively track those who are the most salient or relevant. This provides key information about the limits of our capacity to keep others in mind, and the psychological underpinnings of how we do so.