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The p3 peptides (Aβ17-40/42) rapidly form amyloid fibrils that cross-seed with full-length Aβ

Nature Communications Yao Tian, Andrea P. Torres-Flores, Qi Shang et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57341-4

Abstract The p3 peptides, Aβ17-40/42, are a common alternative cleavage product of the amyloid precursor protein, and are found in diffuse amyloid deposits of Alzheimer’s and Down Syndrome brains. The p3 peptides have been mis-named ‘non-amyloidogenic’. Here we show p340/42 peptides rapidly form amyloid fibrils, with kinetics dominated by secondary nucleation. Importantly, cross-seeding experiments, with full-length Aβ induces a strong nucleation between p3 and Aβ peptides. The cross-seeding interaction is highly specific, and occurs only when the C-terminal residues are matched. We have imaged membrane interactions with p3, and monitored Ca2+ influx and cell viability with p3 peptide. Together this data suggests the N-terminal residues influence, but are not essential for, membrane disruption. Single particle analysis of TEM images indicates p3 peptides can form ring-like annular oligomers. Patch-clamp electrophysiology, shows p342 oligomers are capable of forming large ion-channels across cellular membranes. A role for p3 peptides in disease pathology should be considered as p3 peptides are cytotoxic and cross-seed Aβ fibril formation in vitro.

Author Correction: The RING-finger ubiquitin E3 ligase TaPIR1 targets TaHRP1 for degradation to suppress chloroplast function

Nature Communications Rongrong Zhang, Yu Wu, Xiangru Qu et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57387-4

Ethylene promotes SMAX1 accumulation to inhibit arbuscular mycorrhiza symbiosis

Nature Communications Debatosh Das, Kartikye Varshney, Satoshi Ogawa et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57222-w

Abstract Most land plants engage in arbuscular mycorrhiza (AM) symbiosis with Glomeromycotina fungi for better access to mineral nutrients. The plant hormone ethylene suppresses AM development, but a molecular explanation for this phenomenon is lacking. Here we show that ethylene inhibits the expression of many genes required for AM formation in Lotus japonicus. These genes include strigolactone biosynthesis genes, which are needed for fungal activation, and Common Symbiosis genes, which are required for fungal entry into the root. Application of strigolactone analogs and ectopic expression of the Common Symbiosis gene Calcium Calmodulin-dependent Kinase (CCaMK) counteracts the effect of ethylene. Therefore, ethylene likely inhibits AM development by suppressing expression of these genes rather than by inducing defense responses. These same genes are regulated by SUPPRESSOR OF MAX2 1 (SMAX1), a transcriptional repressor that is proteolyzed during karrikin signaling. SMAX1 is required for suppression of AM by ethylene, and SMAX1 abundance in nuclei increases after ethylene application. We conclude that ethylene suppresses AM by promoting accumulation of SMAX1. SMAX1 emerges as a signaling hub that integrates karrikin and ethylene signaling, thereby orchestrating development of a major plant symbiosis with a plant’s physiological state.

Interference-free nanogap pressure sensor array with high spatial resolution for wireless human-machine interfaces applications

Nature Communications Jae-Soon Yang, Myung-Kun Chung, Jae-Young Yoo et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57232-8

SKI complex loss renders 9p21.3-deleted or MSI-H cancers dependent on PELO

Nature Patricia C. Borck, Isabella Boyle, Kristina Jankovic et al. Feb 27, 2025 DOI: 10.1038/s41586-024-08509-3

Abstract Cancer genome alterations often lead to vulnerabilities that can be used to selectively target cancer cells. Various inhibitors of such synthetic lethal targets have been approved by the FDA or are in clinical trials, highlighting the potential of this approach1–3. Here we analysed large-scale CRISPR knockout screening data from the Cancer Dependency Map and identified a new synthetic lethal target, PELO, for two independent molecular subtypes of cancer: biallelic deletion of chromosomal region 9p21.3 or microsatellite instability-high (MSI-H). In 9p21.3-deleted cancers, PELO dependency emerges from biallelic deletion of the 9p21.3 gene FOCAD, a stabilizer of the superkiller complex (SKIc). In MSI-H cancers, PELO is required owing to MSI-H-associated mutations in TTC37 (also known as SKIC3), a critical component of the SKIc. We show that both cancer subtypes converge to destabilize the SKIc, which extracts mRNA from stalled ribosomes. In SKIc-deficient cells, PELO depletion induces the unfolded protein response, a stress response to accumulation of misfolded or unfolded nascent polypeptides. Together, our findings indicate PELO as a promising therapeutic target for a large patient population with cancers characterized as MSI-H with deleterious TTC37 mutations or with biallelic 9p21.3 deletions involving FOCAD.

Serum-tolerant polymeric complex for stem-cell transfection and neural differentiation

Nature Communications Yi Jin, Guochen Han, Yuemei Gao et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57278-8

Unprotected carbon dominates decadal soil carbon increase

Nature Communications Minglong Liu, Shilu Zheng, Elise Pendall et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57354-z

Circulating miR-126-3p is a mechanistic biomarker for knee osteoarthritis

Nature Communications Thomas G. Wilson, Madhu Baghel, Navdeep Kaur et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57308-5

Magnetically reshapable 3D multi-electrode arrays of liquid metals for electrophysiological analysis of brain organoids

Nature Communications Enji Kim, Eunseon Jeong, Yeon-Mi Hong et al. Feb 27, 2025 DOI: 10.1038/s41467-024-55752-3

Abstract To comprehend the volumetric neural connectivity of a brain organoid, it is crucial to monitor the spatiotemporal electrophysiological signals within the organoid, known as intra-organoid signals. However, previous methods risked damaging the three-dimensional (3D) cytoarchitecture of organoids, either through sectioning or inserting rigid needle-like electrodes. Also, the limited numbers of electrodes in fixed positions with non-adjustable electrode shapes were insufficient for examining the complex neural activity throughout the organoid. Herein, we present a magnetically reshapable 3D multi-electrode array (MEA) using direct printing of liquid metals for electrophysiological analysis of brain organoids. The adaptable distribution and the softness of these printed electrodes facilitate the spatiotemporal recording of intra-organoid signals. Furthermore, the unique capability to reshape these soft electrodes within the organoid using magnetic fields allows a single electrode in the MEA to record from multiple points, effectively increasing the recording site density without the need for additional electrodes.

Molecular HDD logic for encrypted massive data storage

Nature Communications Bingjie Guo, Xinhui Chen, An Chen et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57410-8

Move beyond ‘publish or perish’ by measuring behaviours that benefit academia

Nature Kelly-Ann Allen Feb 27, 2025 DOI: 10.1038/d41586-025-00563-9

Space-time wave packets in multimode optical fibers with controlled dynamic motions and tunable group velocities

Nature Communications Xinzhou Su, Kaiheng Zou, Yingning Wang et al. Feb 27, 2025 DOI: 10.1038/s41467-025-56982-9

Other countries should copy Nepal’s approach to tackling cervical cancer

Nature Binod G. C., Alisha G. C. Feb 27, 2025 DOI: 10.1038/d41586-025-00589-z

A synergistic coordination-reduction interface for electrochemical reductive extraction of uranium with low impurities from seawater

Nature Communications Hongliang Guo, Enmin Hu, Yihao Wang et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57113-0

Heterogeneous Earth’s mantle drilled at an embryonic ocean

Nature Communications Alessio Sanfilippo, Ashutosh Pandey, Norikatsu Akizawa et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57121-0

Large scale investigation of GPCR molecular dynamics data uncovers allosteric sites and lateral gateways

Nature Communications David Aranda-García, Tomasz Maciej Stępniewski, Mariona Torrens-Fontanals et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57034-y

National climate policies must address mental health

Nature Lea Schlatter, Manasi Kumar, Pushpam Kumar Feb 27, 2025 DOI: 10.1038/d41586-025-00587-1

Aspirin-responsive gene switch regulating therapeutic protein expression

Nature Communications Jinbo Huang, Ana Palma Teixeira, Ting Gao et al. Feb 27, 2025 DOI: 10.1038/s41467-025-57275-x

Abstract Current small-molecule-regulated synthetic gene switches face clinical limitations such as cytotoxicity, long-term side-effects and metabolic disturbances. Here, we describe an advanced synthetic platform inducible by risk-free input medication (ASPIRIN), which is activated by acetylsalicylic acid (ASA/aspirin), a multifunctional drug with pain-relieving, anti-inflammatory, and cardiovascular benefits. To construct ASPIRIN, we repurpose plant salicylic acid receptors NPR1 and NPR4. Through domain truncations and high-throughput mutant library screening, we enhance their ASA sensitivity. Optimized NPR1 fused with a membrane-tethering myristoylation signal (Myr-NPR1) forms a complex with NPR4, which is fused with a DNA binding domain (VanR) and a transactivation domain (VP16). ASA induces dissociation of the Myr-NPR1/NPR4-VanR-VP16 complex, allowing nuclear translocation of NPR4-VanR-VP16 to activate VanR-operator-controlled gene expression. In male diabetic mice implanted with microencapsulated ASPIRIN-engineered cells, ASA regulates insulin expression, restores normoglycemia, alleviates pain and reduces biomarkers of diabetic neuropathy and inflammation. We envision this system will pave the way for aspirin-based combination gene therapies.

How quickly are you ageing? What molecular ‘clocks’ can tell you about your health

Nature Heidi Ledford Feb 27, 2025 DOI: 10.1038/d41586-025-00566-6

Lattice-driven gating in a Cu-based zeolitic imidazolate framework for efficient high-temperature hydrogen isotope separation

Nature Communications Minji Jung, Jaewoo Park, Raeesh Muhammad et al. Feb 27, 2025 DOI: 10.1038/s41467-025-56649-5