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Comparative evaluation of Allplex HPV28 and Anyplex II HPV28 assays for high-risk HPV genotyping in cervical samples

PLoS ONE Sarah Mafi, Flavie Theuillon, Sylvain Meyer et al. Apr 01, 2025 DOI: 10.1371/journal.pone.0320978

Background/Objectives Human papillomavirus (HPV) genotyping is essential for cervical cancer screening and prevention. The AllplexTM HPV28 real-time PCR kit, using different chemistry and results analysis compared with its predecessor, the AnyplexTM II HPV28 kit, has recently been launched. This study aims to compare the AllplexTM HPV28 and AnyplexTM II HPV28 assays in detecting and genotyping the 13 high-risk (HR)-HPV types. Study design Between 2022 and 2023, 459 cervical samples from women undergoing cervical cancer screening were selected. These samples were analysed by liquid-based cytology and tested by both kits concurrently. Results AllplexTM HPV28 Ct values correlated well with AnyplexTM II HPV28 signal intensity scores. No significant differences between assays were observed in overall and genotype-specific HR-HPV prevalence determined in all samples and according to cytological results. In addition, no significant differences were identified between assays in the detection of single and multiple HR-HPV infections. Most of the discordant results corresponded to samples showing weak HR-HPV signals and multiple HR-HPV types. Conclusions Our results demonstrate that the AllplexTM HPV28 kit can be used for HPV genotyping, with results overall similar to those obtained with the AnyplexTM II HPV28 kit and the addition of Ct values for patient follow-up. The clinical implications of the potentially reduced sensitivity of the AllplexTM HPV28 kit in detecting HPV31 (p =  0.07) and HPV39 (p =  0.08) warrant further investigation in subsequent studies.

An adaptive search mechanism with convolutional learning networks for online social media text summarization and classification model

Scientific Reports Reema G. AL-anazi, Muhammad Swaileh A. Alzaidi, Majdy M. Eltahir et al. Apr 01, 2025 DOI: 10.1038/s41598-025-95381-4

Cholesterol-dependent enzyme activity of human TSPO1

Proceedings of the National Academy of Sciences Weihua Qiu, Thi Kim Hoang Trinh, Claudio Catalano et al. Apr 01, 2025 DOI: 10.1073/pnas.2323045122

The amino acid sequence of the tryptophan-rich sensory proteins (TSPO) is substantially conserved throughout all kingdoms of life. Human mitochondrial TSPO1 ( Hs TSPO1) binds to porphyrins and steroids, although its interactions with these molecules remains unknown. Hs TSPO1 is associated with numerous physiological and pathological disorders, but the underlying molecular mechanisms are unknown. Here, we disclose the finding of human mitochondrial TSPO as a cholesterol-dependent protoporphyrin IX oxygenase. The results of our biochemical characterization are consistent with structural data and evolutionary analysis. The dependence of Hs TSPO1 activity on cholesterol may be the result of the coevolution of this membrane protein with the membrane system. Our study provides a molecular foundation for comprehending the various roles played by mitochondrial TSPO in normal physiological and pathological situations.

Intermittent hypoxic stimulation promotes efficient expression of Hypoxia-inducible factor-1α and exerts a chondroprotective effect in an animal osteoarthritis model

PLoS ONE Ryota Cha, Shuji Nakagawa, Yuji Arai et al. Apr 01, 2025 DOI: 10.1371/journal.pone.0319976

Hypoxia-inducible factor-1α plays an important role in the homeostasis of articular cartilage in hypoxic environments. Therefore, modulation of hypoxia-inducible factor-1α by regulating the oxygen environment could be a useful treatment for osteoarthritis. This study aimed to assess the chondroprotective effects of intermittent hypoxia on cultured chondrocytes and an animal model of osteoarthritis. In vitro, human chondrocytes were exposed to 2 h of hypoxic stimulation three times at 1-h intervals, and protein and gene expression of hypoxia-inducible factor-1α, ACAN, and cell viability was measured over time. In vivo, 8-week-old male Wistar rats were injected with monosodium iodoacetate to induce osteoarthritis and then reared in 12% hypoxia for 24 h, followed by 24 h in steady oxygen, repeated alternately for a total of 28 days. A histological analysis was performed on days 8 and 28. In the intermittent hypoxia group, each protein expression increased with each repeated hypoxic stimulation to human chondrocytes; finally, the protein level was significantly higher with intermittent hypoxia than with continuous hypoxic stimulation, cell viability was increased, and gene expression was not significantly increased. In the osteoarthritis animal model, for 8 days, there were stronger hypoxia-inducible factor-1α staining and no significant differences in articular cartilage destruction. Furthermore, for 28 days, there was significantly less articular cartilage destruction in the rat osteoarthritis model with intermittent hypoxia than with steady oxygen rearing. Intermittent hypoxia increased cartilage metabolism by increasing hypoxia-inducible factor-1α proteins in articular chondrocytes, which may be effective in preventing articular cartilage degeneration in a rat osteoarthritis model.

Immobilization of silver nanoparticles and silver iodide within bamboo fabrics for wastewater treatment

Scientific Reports Mohamed Rehan, El-Amir M. Emam, Hossam E. Emam Apr 01, 2025 DOI: 10.1038/s41598-025-93188-x

Abstract Pathogenic microorganisms and dyes are the main sources of water pollution. These pollutants are extremely hazardous and may harm aquatic life and human health. As a result, removing these pollutants is critical in assessing contamination risks and mitigating potential health hazards. To effectively remove pathogenic microorganisms and dyes from wastewater, an efficient multi-functional material was designed based on AgI, Ag NPs, and Ag NPs@AgI immobilized on bamboo fabrics as a support substrate. The water disinfection aptitude of the modified bamboo fabrics was evaluated against different microorganisms. The results showed that the Ag NPs@AgI@bamboo showed excellent antibacterial activity against S. aureus (88%) and E. coli (90%) as well as perfect antifungal activity against C. albicans (82%). Methylene blue (MB) was used as a pollutant model to test the catalytic and photocatalytic activity of modified bamboo fabrics. The results show that Ag NPs@AgI@bamboo was highly efficient in removing the MB dye via reduction (90%) after 60 min or photodegradation (93%) after 6 h of UV light irradiation. The pseudo-first-order kinetic study shows that Ag NPs@AgI@bamboo possessed outstanding catalytic reduction and photocatalytic degradation activities toward MB.

Climate change impacts have potentially big repercussions for kids’ education

Proceedings of the National Academy of Sciences Saima Sidik Apr 01, 2025 DOI: 10.1073/pnas.2505073122

Associations of subjective age trajectories with loneliness and stress across adulthood

PLoS ONE Anna E. Kornadt, Markus Wettstein, Anthony Lepinteur et al. Apr 01, 2025 DOI: 10.1371/journal.pone.0320673

Subjective age, that is the age a person feels like in relation to their chronological age, is indicative of a variety of biological, psychological, and social aging processes. Despite its importance, studies that investigate multi-variate, dynamic, longitudinal relations of subjective age with its potential determinants and potential mechanisms of these relations have so far rarely been employed. In the current study, we focus on loneliness as a potential subjective age determinant. As loneliness affects a variety of psychosocial and health outcomes across life and is stereotypically perceived as a feature of old age, we investigate whether loneliness is related with levels and changes in subjective age. We furthermore test whether this association is mediated via self-reported stress. N =  5,594 participants aged 18 – 93 years (Mage =  50.41, SD =  15.99) who participated in a longitudinal survey comprising up to three measurement occasions over a time span of 2.5 years reported their loneliness, subjective age, and stress as well as sociodemographic and health-related covariates. We employed latent growth modeling and found that, when controlling for sociodemographic and health-related covariates, higher loneliness was related to an older subjective age cross-sectionally and to a steeper increase in subjective age over time. These relations were mediated via stress; however, the relation between stress and subjective age was no longer statistically significant when including the covariates. All associations were qualified by significant interactions with chronological age, albeit in different directions. Our findings attest to associations between loneliness, stress and subjective aging experiences and highlight the need for an age-informed approach when planning further studies and interventions.

Insecticidal effects of nano-encapsulated lemongrass essential oil on the population parameters of Spodoptera frugiperda using two-sex life table

Scientific Reports Samar Sayed Ibrahim, Magdy Youssef El-Kholy, Shehata El-Sayed Mohamed Shalaby Apr 01, 2025 DOI: 10.1038/s41598-025-93779-8

Abstract Essential oils derived from plants have demonstrated their efficacy in controlling insects; however, their poor physical characteristics restrict their widespread application. In this study, nano-encapsulation employing emulsification followed by ultrasonication technique has improved the insecticidal efficacy of lemongrass oil (LGO) against Spodoptera frugiperda. Beta-cyclodextrin (β-CD) and gum Arabic (GA) were used as coating materials to protect the vital components of LGO. Different concentrations of LGO pure and nano-capsule formulations have been used to examine the biological development of S. frugiperda 1st larval instar using two sex life table. D-Limonene, E-Citral, and Z-Citral were identified as the main compounds in LGO by GC–MS analysis. The oil concentration affected the physical properties of nano-capsules. The LGO nano-capsules had particle sizes ranging from 279.63 to 471.93 nm and an encapsulation efficiency between 51.94 and 83.59%. Following 96 h, the LGO:β-CD/GA treatment of S. frugiperda had a lower LC50 value (1.52%) than the LGO treatment (2.48%), indicating that the nano-capsules were more toxic. Nano-capsules had a significant adverse effect on the life table parameters of S. frugiperda. The results of this study indicate that encapsulating LGO with β-CD/GA inclusion enhanced the efficacy of lemongrass oil against S. frugiperda.

Allosteric mechanism in the distinctive coupling of G <sub>q</sub> and G <sub>s</sub> to the parathyroid hormone type 1 receptor

Proceedings of the National Academy of Sciences Xuan Zhang, Ji Young Lee, Jonathan Pacheco et al. Apr 01, 2025 DOI: 10.1073/pnas.2426178122

The mechanism determining the preferential stimulation of one heterotrimeric G protein signaling pathway over another by a ligand remains undetermined. By reporting the cryogenic electron microscopy (cryo-EM) structure of the parathyroid hormone (PTH) type 1 receptor (PTH1R) complexed with Gq and comparing its allosteric dynamics with that of PTH1R in complex with G s , we uncover a mechanism underlying such preferences. We show that an allosteric coupling between the ligand PTH and the C-terminal helix α5 of the Gα subunit controls the stability of the PTH1R complex with the specific G protein, G s or G q . Single-cell-level experiments further validate the G protein–selective effects of the PTH binding pose by demonstrating the differential, G protein–dependent residence times and affinity of this ligand at the PTH1R binding site. The findings deepen our understanding of the selective coupling of PTH1R to G s or G q and how it relates to the stability and kinetics of ligand binding. They explain the observed variability in the ligand-binding affinity of a GPCR when coupled to different G proteins.

Does physical activity-based intervention decrease repetitive negative thinking? A systematic review

PLoS ONE Shimeng Wang, Mingyang Lu, Xiaoxiao Dong et al. Apr 01, 2025 DOI: 10.1371/journal.pone.0319806

Background Repetitive negative thinking (RNT) is characterized by its persistence, difficulty in control, and the tendency to focus on negative thoughts and past events. It is recognized as a key factor in the development and maintenance of mental health issues such as depression and anxiety. A growing body of research suggests that physical activity-based interventions may effectively reduce RNT. However, the extent of this effect and the mechanisms behind it remain inconsistent across studies. Methods This systematic review synthesized evidence from 19 peer-reviewed studies retrieved from PubMed, Web of Science, and other relevant databases up to December 2024. The objective was to investigate the efficacy of physical activity-based interventions in reducing RNT, with a particular focus on the influence of intervention type, duration, frequency, and intensity. Results The review found that physical activity interventions effectively reduce RNT, particularly when combined with psychological training. Combined interventions yielded greater reductions than physical activity alone. Moderate-to-high intensity exercise (30-60 min/session, 3-5 times/week) over an extended period was most effective, likely due to physiological, psychological, and social mechanisms. Single-session interventions showed limited effects, emphasizing the need for sustained engagement. Notably, interventions were more effective in individuals with depression, anxiety, or chronic stress, whereas effects in healthy individuals were smaller and more variable, suggesting that baseline symptomatology enhances intervention benefits. Conclusions This review underscores the importance of designing intervention protocols that integrate both physical and psychological components to achieve greater reductions in RNT. The findings provide empirical support for the use of combined interventions involving physical activity and psychological training as an effective strategy for managing RNT. Additionally, future research should prioritize identifying optimal intervention characteristics (e.g., type, frequency, intensity) and addressing methodological limitations, such as the inclusion of diverse participant samples and broader language coverage, to provide more comprehensive insights into effective intervention strategies. These findings have important implications for mental health interventions and offer practical guidance for developing evidence-based approaches to reduce RNT.

Object detection model design for tiny road surface damage

Scientific Reports Chenguang Wu, Min Ye, Hongwei Li et al. Apr 01, 2025 DOI: 10.1038/s41598-025-95502-z

Enhancing immunotherapy with tumour-responsive nanomaterials

Nature Reviews Clinical Oncology Stephen W. Linderman, Louis DeRidder, Lucía Sanjurjo et al. Apr 01, 2025 DOI: 10.1038/s41571-025-01000-6

The PVD neuron has male-specific structure and mating function in <i>Caenorhabditis elegans</i>

Proceedings of the National Academy of Sciences Yael Iosilevskii, David H. Hall, Menachem Katz et al. Apr 01, 2025 DOI: 10.1073/pnas.2421376122

Neurons display unique shapes and establish intricate networks, which may differ between sexes. In complex organisms, studying sex differences in structure and function of individual neurons is difficult. The nematode Caenorhabditis elegans hermaphrodites and males present an exceptional model for studying neuronal morphogenesis in a simple, sexually dimorphic system. We focus on the polymodal sensory bilateral neuron pair PVD, which forms a complex but stereotypic dendritic tree composed of multiple subunits that resemble candelabra. PVD is well studied in hermaphrodites, but not in males. We show here that during larval development, male PVD extends a similar architecture to the hermaphrodite utilizing the sexually shared Menorin patterning mechanism. In early adulthood, however, male PVD develops a unique extension into the copulatory tail structure. Alongside established tail ray neurons RnA and RnB, we show PVD is a third, previously unrecognized, neuron within the tail rays. Unlike RnA and RnB, PVD extends anterogradely, branches and turns within the ray hypodermis, and is nonciliated. This PVD sexually dimorphic arborization is absent in mutant backgrounds which perturb the Menorin guidance complex. SAX-7/L1CAM, a hypodermal component of this complex, shows a male-specific expression pattern which precedes PVD extension, and its presence allows PVD to enter the tail rays. Further, our results reveal that genetically altered arborization or ablation of the PVD results in male mating behavioral defects, particularly as males turn around the hermaphrodite. These results uncover an adult-stage sexual dimorphism of dendritic branching and a function for PVD in male sexual behavior.

Correction: Endurance-trained subjects and sedentary controls increase ventricular contractility and efficiency during exercise: Feasibility of hemodynamics assessed by non-invasive pressure-volume loops

PLoS ONE Björn Östenson, Ellen Ostenfeld, Jonathan Edlund et al. Apr 01, 2025 DOI: 10.1371/journal.pone.0321568

A hybrid parallel convolutional spiking neural network for enhanced skin cancer detection

Scientific Reports K. Anup Kumar, C. Vanmathi Apr 01, 2025 DOI: 10.1038/s41598-025-85627-6

Abstract The most widespread kind of cancer, affecting millions of lives is skin cancer. When the condition of illness worsens, the chance of survival is reduced, and thus detection of skin cancer is extremely difficult. Hence, this paper introduces a new model, known as Parallel Convolutional Spiking Neural Network (PCSN-Net) for detecting skin cancer. Initially, the input skin cancer image is pre-processed by employing Medav filter to eradicate the noise in image. Next, affected region is segmented by utilizing DeepSegNet, which is formed by integrating SegNet and Deep joint segmentation, where RV coefficient is used to fuse the outputs. Here, the segmented image is then augmented by including process, such as geometric transformation, colorspace transformation, mixing images Pixel averaging (mixup), and overlaying crops (CutMix). Then textural, statistical, Discrete Wavelet Transform (DWT) based Local Direction Pattern (LDP) with entropy, and Local Normal Derivative Pattern (LNDP) features are mined. Finally, skin cancer detection is executed using PCSN-Net, which is formed by fusing Parallel Convolutional Neural Network (PCNN) and Deep Spiking Neural Network (DSNN). In this work, the suggested PCSN-Net system shows high accuracy and reliability in identifying skin cancer. The experimental findings suggest that PCSN-Net has an accuracy of 95.7%, a sensitivity of 94.7%, and a specificity of 92.6%. These parameters demonstrate the model’s capacity to discriminate among malignant and benign skin lesions properly. Furthermore, the system has a false positive rate (FPR) of 10.7% and a positive predictive value (PPV) of 90.8%, demonstrating its capacity to reduce wrong diagnosis while prioritizing true positive instances. PCSN-Net outperforms various complex algorithms, including EfficientNet, DenseNet, and Inception-ResNet-V2, despite preserving effective training and inference times. The results obtained show the feasibility of the model for real-time clinical use, strengthening its capacity for quick and accurate skin cancer detection.

Cancer-associated SF3B1 mutation K700E causes widespread changes in U2/branchpoint recognition without altering splicing

Proceedings of the National Academy of Sciences Andrey Damianov, Chia-Ho Lin, Jian Zhang et al. Apr 01, 2025 DOI: 10.1073/pnas.2423776122

Myelodysplastic syndromes and other cancers are often associated with mutations in the U2 snRNP protein SF3B1. Common SF3B1 mutations, including K700E, disrupt SF3B1 interaction with the protein SUGP1 and induce aberrant activation of alternative 3′ splice sites (ss), presumably resulting from aberrant U2/branch site (BS) recognition by the mutant spliceosome. Here, we apply a method of U2 IP-seq to profile BS binding across the transcriptome of K562 leukemia cells carrying the SF3B1 K700E mutation. For alternative 3′ ss activated by K700E, we identify their associated BSs and show that they are indeed shifted from the WT sites. Unexpectedly, we also identify thousands of additional changes in BS binding in the mutant cells that do not alter splicing. These new BSs are usually very close to the natural sites, occur upstream or downstream, and either exhibit stronger base-pairing potential with U2 snRNA or are adjacent to stronger polypyrimidine tracts than the WT sites. The widespread imprecision in BS recognition induced by K700E with limited changes in 3′ ss selection expands the physiological consequences of this oncogenic mutation.

Artificial intelligence (AI) in nursing administration: Challenges and opportunities

PLoS ONE Omar Qaladi, Mukhlid Alshammari, Abdullah Abdulrahim Almalki Apr 01, 2025 DOI: 10.1371/journal.pone.0319588

Artificial Intelligence (AI) is increasingly transforming nursing administration by enhancing operational efficiency and supporting data-driven decision-making. This study explores registered nurses perceptions of AI in Saudi Arabia, focusing on both challenges and opportunities. A cross-sectional survey of 202 nurses revealed that 93.6% believe AI improves understanding, and 88.1% feel it enhances the quality of learning. Significant correlations were found between years of experience and AI usage (r =  0.342, p &lt;  0.001) and between sources of information and AI perception (r =  0.146, p =  0.039). While 80.7% expressed concern that AI could reduce critical thinking, 76.8% feared job displacement. These findings underscore the need for training, ethical guidelines, and support systems to foster effective AI integration, enhancing nursing practice while addressing concerns around professional roles.

Development and evaluation of Chia seed-based nanofibers and nanoemulsions for Bacillus coagulans Encapsulation

Scientific Reports Shirin Rashnoei, Mozhgan Shahamirian, Sedigheh Yazdanpanah et al. Apr 01, 2025 DOI: 10.1038/s41598-025-87703-3

Will I feel better? Raising the bar for quality of life in oncology

Nature Reviews Clinical Oncology Ariadna Tibau, Alejandra Romano, Aaron S. Kesselheim Apr 01, 2025 DOI: 10.1038/s41571-025-01002-4

Bridging the human–AI knowledge gap through concept discovery and transfer in AlphaZero

Proceedings of the National Academy of Sciences Lisa Schut, Nenad Tomašev, Thomas McGrath et al. Apr 01, 2025 DOI: 10.1073/pnas.2406675122

AI systems have attained superhuman performance across various domains. If the hidden knowledge encoded in these highly capable systems can be leveraged, human knowledge and performance can be advanced. Yet, this internal knowledge is difficult to extract. Due to the vast space of possible internal representations, searching for meaningful new conceptual knowledge can be like finding a needle in a haystack. Here, we introduce a method that extracts new chess concepts from AlphaZero, an AI system that mastered chess via self-play without human supervision. Our method excavates vectors that represent concepts from AlphaZero’s internal representations using convex optimization, and filters the concepts based on teachability (whether the concept is transferable to another AI agent) and novelty (whether the concept contains information not present in human chess games). These steps ensure that the discovered concepts are useful and meaningful. For the resulting set of concepts, prototypes (chess puzzle–solution pairs) are presented to experts for final validation. In a preliminary human study, four top chess grandmasters (all former or current world chess champions) were evaluated on their ability to solve concept prototype positions. All grandmasters showed improvement after the learning phase, suggesting that the concepts are at the frontier of human understanding. Despite the small scale, our result is a proof of concept demonstrating the possibility of leveraging knowledge from a highly capable AI system to advance the frontier of human knowledge; a development that could bear profound implications and shape how we interact with AI systems across many applications.