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Discover research articles across all indexed journals

Congruence between noise and plasticity in protein expression

Scientific Reports Saburo Tsuru, Chikara Furusawa Jul 08, 2025 DOI: 10.1038/s41598-025-07594-2

Abstract Gene expression responds to various types of perturbations, such as mutations, environmental changes, and stochastic molecular noises. These different types of variability are often interdependent, where genes sensitive to one perturbation tend to be sensitive to others. However, the relationship between plasticity (variability in response to environmental changes) and noise (variability among cells under the same conditions) in gene expression remains debatable. Previous studies predicted a positive correlation between plasticity and noise in nonessential genes, but these were often measured at different levels: plasticity at the mRNA level and noise at the protein level. This methodological discrepancy complicates the understanding of their relationship. We addressed this by measuring protein expression in Escherichia coli , quantifying both plasticity and noise from the same dataset using flow cytometry. Essential genes exhibited lower noise and plasticity than nonessential genes. Nonessential genes showed a positive correlation between noise and plasticity, while essential genes did not. This study provides empirical evidence of essentiality-dependent coupling between noise and plasticity in protein expression, highlighting the organization of different types of variabilities.

The influence of biological preparations on soil parameters and aclonifen removal

Scientific Reports Ewa Szpyrka, Praskowicz Aleksandra, Serwin Natalia et al. Jul 08, 2025 DOI: 10.1038/s41598-025-10351-0

Effectiveness of machine learning models in diagnosis of heart disease: a comparative study

Scientific Reports Waleed Alsabhan, Abdullah Alfadhly Jul 08, 2025 DOI: 10.1038/s41598-025-09423-y

Comparison of the outcomes of trabeculectomy and Ab interno trabeculotomy on corneal biomechanics

Scientific Reports Shuichiro Aoki, Ryo Asaoka, Yuri Fujino et al. Jul 08, 2025 DOI: 10.1038/s41598-025-09799-x

Recurrent academic path recommendation model for engineering students using MBTI indicators and optimization enabled recurrent neural network

Scientific Reports Anupama V, Sudheep Elayidom M Jul 08, 2025 DOI: 10.1038/s41598-025-08804-7

Enhancing stroke risk prediction through class balancing and data augmentation with CBDA-ResNet50

Scientific Reports Muhammad Asim Saleem, Ashir Javeed, Wasan Akarathanawat et al. Jul 08, 2025 DOI: 10.1038/s41598-025-07350-6

Quality prediction method for automotive body resistance spot welding based on digital twin technology

Scientific Reports Ruiping Luo, ShengWen Zhou, Liangyi Nie et al. Jul 08, 2025 DOI: 10.1038/s41598-025-09959-z

Multiregional representations of intertemporal decision making in human single neurons

Scientific Reports Jay L. Gill, Mahmoud Omidbeigi, Jihye Ryu et al. Jul 08, 2025 DOI: 10.1038/s41598-025-00012-7

Abstract Understanding the neural mechanisms underlying delay discounting—the tendency to prefer smaller, immediate rewards over larger, delayed rewards—is critical for elucidating the etiology of impulsive decision-making, a hallmark of several psychiatric conditions including substance use and impulse control disorders. Here, we investigate single-neuron activity in the orbitofrontal cortex (OFC), hippocampus, and amygdala of nine human participants performing a delay discounting task. Intracranial recordings yielded a total of 193 single units (50 OFC, 68 amygdala, and 75 hippocampus) and reveal distinct neural correlates of decision-making, including representations of choice preferences and decision difficulty across all three regions. Analyses demonstrate preferential encoding of choice in the OFC. Additionally, we report that hippocampal activity reflects interindividual differences in discounting rates, with stronger representation observed in participants with slower temporal discounting. These findings provide novel insights into the multiregional neural computations underlying intertemporal decision-making and their relationship to impulsive behaviors.

Structure-based design of an antibacterial peptide from the Myotoxin II sequence, evaluating its effectiveness against Gram-negative bacteria and its safety

Scientific Reports Tatiana Huertas, Diana Millán, Angela V. Fonseca-Benitez et al. Jul 08, 2025 DOI: 10.1038/s41598-025-08397-1

Protective capacity of Rutin against oxidative damage induced by saline stress in the roots of the model organism Allium cepa

Scientific Reports Carlos Alonso Leite dos Santos, Antonia Adeublena de Araújo Monteiro, Patric Anderson Gomes da Silva et al. Jul 08, 2025 DOI: 10.1038/s41598-025-04235-6

Advanced hydrogel optical fiber sensors with triple-readout for real-time pH sensing

Scientific Reports Israr Ahmed, Abdelrahman Sakr, Yarjan Abdul Samad et al. Jul 08, 2025 DOI: 10.1038/s41598-025-09087-8

Sub-chilling methods for Atlantic salmon with 7 days in refrigerated seawater and subsequent sub-chilled storage

Scientific Reports Sherry Stephanie Chan, Bjørn Tore Rotabakk, Trond Løvdal et al. Jul 08, 2025 DOI: 10.1038/s41598-025-09371-7

Abstract This study evaluated the sub-chilling of whole gutted Atlantic salmon in refrigerated seawater (RSW) maintained at -1 °C for 7 days, compared to traditional ice storage at 0 °C and RSW storage at -1 °C for 4 days followed by 3 days without ice. After filleting, portioning, and modified atmosphere packaging, the initial RSW-stored fish were continuously stored at -1 °C, while the initial ice-stored fish were stored at refrigerated temperatures at 4 °C. The 7-day RSW storage resulted in a significant weight gain, higher water-holding capacity (WHC), and increased water and salt content. Ice-stored fish had higher calpain activity. After packaging, drip loss was highest for the 4-day RSW-stored fish. The 7-day RSW-stored fish demonstrated consistently better WHC and water content. The CO2 levels decreased, while O2 levels increased more rapidly within the package for the RSW-stored fish. There was also a significant extension in the microbiological and sensory shelf life for the RSW-stored fish. Photobacterium was the dominant bacterium in all storage methods. This study highlights the potential to extend salmon shelf life with sub-chilling, significantly reducing ice usage.

CRO-67 has anti-cancer activity in pancreatic tumor cells and stromal cancer-associated fibroblasts

Scientific Reports Shannon Chiang, Keilah Garcia Netto, John Kokkinos et al. Jul 08, 2025 DOI: 10.1038/s41598-025-09411-2

The association between fodmaps intake and psychological disorders in a large sample of Iranian adults

Scientific Reports Maryam Motallaei, Kimia Rostampour, Shamim Shams-Rad et al. Jul 08, 2025 DOI: 10.1038/s41598-025-08326-2

A bi-decision model for electric vehicle dispatch and battery swapping station charging schedule problem

Scientific Reports Yong Su, Shishun Tian, Hao Wu et al. Jul 08, 2025 DOI: 10.1038/s41598-025-08301-x

RareInsight simplifies the communication of genetic results for rare disease patients

Scientific Reports Kimberly C. Coetzer, Firas Zemzem, Eva Akurut et al. Jul 08, 2025 DOI: 10.1038/s41598-025-09744-y

Unveiling the role of localized polaronic mid-gap states in enhanced carrier transfer in TiO2/BiVO4 heterojunctions under visible light irradiation

Scientific Reports Zixi Yin, Xingchen Liu, Guijie Liang et al. Jul 08, 2025 DOI: 10.1038/s41598-025-10259-9

Abstract TiO2/BiVO4 heterojunctions are considered to be one of the most promising materials for photocatalysts due to their extended carrier lifetime, high visible light response, and good stability. However, while Type-II TiO2/BiVO4 heterojunctions are well-studied, the fundamental mechanism behind the Type-I configurations remains unclear, particularly regarding their unexpected high photocatalytic activity despite theoretically unfavorable band alignment. Herein, we reveal that localized polaronic mid-gap states (SP states) can mediate efficient charge transfer and recombination in TiO2/BiVO4 using time-resolved photoluminescence (PL) spectroscopy and transient absorption spectroscopy (TAS), providing direct experimental evidence of this mechanism. The existence of SP states enables exceptional methyl orange degradation efficiency (nearly 100% in 1 h under visible light) despite the theoretically unfavorable Type-I alignment. This work redefines the potential of Type-I systems for visible-light photocatalysis by demonstrating how polaron engineering overcomes the limitations of traditional band structures, advancing their applications in solar utilization.

Promotion of pathological cardiac remodeling by excessive mitochondrial fission in physical inactivity and myocardial infarction

Scientific Reports Masashi Miyao, Hikaru Oshima, Chihiro Kawai et al. Jul 08, 2025 DOI: 10.1038/s41598-025-10373-8

Pharmacokinetic evaluation of two oral Resveratrol formulations in a randomized, open-label, crossover study in healthy fasting subjects

Scientific Reports Jing Wang, Tingting Liu, Peiru Chen et al. Jul 08, 2025 DOI: 10.1038/s41598-025-08665-0

Urban heat island linkages with the landscape morphology

Scientific Reports T. V. Ramachandra, Rajesh Singh Rana, S. Vinay et al. Jul 08, 2025 DOI: 10.1038/s41598-025-09141-5