Browse Articles

Discover research articles across all indexed journals

Tool wear prediction based on XGBoost feature selection combined with PSO-BP network

Scientific Reports Zhangwen Lin, Yankun Fan, Jinling Tan et al. Jan 24, 2025 DOI: 10.1038/s41598-025-85694-9

Virtual reality perimetry compared to standard automated perimetry in adults with glaucoma: A systematic review

PLoS ONE Natan Hekmatjah, Chimelie Chibututu, Ying Han et al. Jan 24, 2025 DOI: 10.1371/journal.pone.0318074

Purpose The purpose of this systematic review was to consolidate and summarize available data comparing virtual reality perimetry (VRP) with standard automated perimetry (SAP) in adults with glaucoma. Understanding the utility and diagnostic performance of emerging VRP technology may expand access to visual field testing but requires evidence-based validation. Methods A systematic literature search was conducted in 3 databases (PubMed Central, Embase, and Cochrane Central Register of Controlled Trials) from the date of inception to 10/09/2024. Eligibility criteria included randomized controlled trials or prospective or retrospective cohort studies that compared different modalities of VRP to SAP in adults >18 years of age with glaucoma. Studies were excluded if they were review articles, letters, case reports, abstract-only papers, unavailable full text, or non-English language. Identified studies were formally evaluated for risk of bias using the Newcastle-Ottawa tool. The study protocol was prospectively registered with PROSPERO in May 2023 (registration number: CRD42023429071). Results The literature search yielded 1657 results. After deduplication, abstract and title screening, 14 studies met inclusion criteria and were included in the final systematic review. Compared to Humphrey Field Analyzer or Octopus 900, 10 different VRP devices were included in our study: Oculus Quest, Smartphone-based Campimetry, Toronto Portable Perimeter, VirtualEye, Advance Vision Analyzer, VisuALL, Vivid Vision Perimeter, C3 fields visual field analyzer, Radius, and Virtual Field. Overall, published studies of VRP are promising; however, more work is required to better evaluate these devices, namely test-retest repeatability. Conclusions VRP holds strong potential to evaluate visual fields in adults with glaucoma, though further data is needed to validate emerging technologies and testing protocols. Eye providers may consider using these devices to monitor certain adults with glaucoma.

A method of coating life prediction based on high temperature thermal shock life test and three-dimensional heat transfer analysis

Scientific Reports Dongyang An, Jiaye Chen, Zhao Liu et al. Jan 24, 2025 DOI: 10.1038/s41598-025-86966-0

Correction: Achieving the 95 95 95 targets for all: A pathway to ending AIDS

PLoS ONE Jan 24, 2025 DOI: 10.1371/journal.pone.0318123

Dose-dependent enhancement of in vitro osteogenic activity on strontium-decorated polyetheretherketone

Scientific Reports Yongheng Zhang, Lvhua Liu, Mengqi Li et al. Jan 24, 2025 DOI: 10.1038/s41598-025-86561-3

Psychometric validation of the Cystic Fibrosis Impact Questionnaire (CF-IQ): A patient-reported outcome assessing impacts of cystic fibrosis

PLoS ONE Daniel Serrano, Alyssa Uzumcu, Maya Gerstein et al. Jan 24, 2025 DOI: 10.1371/journal.pone.0317775

The Cystic Fibrosis (CF) Impact Questionnaire (CF-IQ) was qualitatively developed to assess the impact of CF in the context of treatment advancements and increased longevity. This study reports the CF-IQ validation. In this noninterventional validation study, people with CF completed the 40-item CF-IQ and validating patient-reported outcome measures (PROMs) via electronic diaries at enrollment (baseline) and at the 4-week follow-up. Validation consisted of modern methods and focus groups to finalize structural validity, and classical methods to assess internal consistency [1–3], test-retest reliability [4,5], concurrent validity [5], and known-groups validity [5] of the CF-IQ. At baseline, 214 adults completed the survey; 193 completed the follow-up survey. Unidimensional item response theory (IRT) models were separately fit to 5 prespecified domains (Control and Burden of CF Treatment Impacts, Physical Activity Impacts, Social Activity Impacts, Emotional Impacts, and Work/School Limitation Impacts). IRT local dependence (LD) statistics identified 17 redundant items. Two independent CF-patient focus groups (14 total patients) confirmed these findings, and the 17 items were dropped. Each domain defined on the final 23 items achieved the criterion of exact model fit as measured by the root mean squared error of approximation (RMSEA, values = 0), Internal consistency (Cronbach’s α) values ranged from 0.81 to 0.89, 4 of 5 domains achieved acceptable test-retest reliability, with intraclass correlation coefficient (ICC) values ≥ 0.7, acceptable concurrent validity was achieved for all domains, and known-groups validity was established. The novel CF-IQ is a psychometrically robust PROM capturing patient-centric impacts of CF in the context of the current standard of care.

Pharmacovigilance imbalance analysis of VEGFR-TKI-related taste and smell disorders

Scientific Reports Zhong-hua Fu, Chenglong Zhao, Yaqin Wang et al. Jan 24, 2025 DOI: 10.1038/s41598-025-87678-1

Low-resource MobileBERT for emotion recognition in imbalanced text datasets mitigating challenges with limited resources

PLoS ONE Muhammad Hussain, Caikou Chen, Sami S. Albouq et al. Jan 24, 2025 DOI: 10.1371/journal.pone.0312867

Modern dialogue systems rely on emotion recognition in conversation (ERC) as a core element enabling empathetic and human-like interactions. However, the weak correlation between emotions and semantics poses significant challenges to emotion recognition in dialogue. Semantically similar utterances can express different types of emotions, depending on the context or speaker. In order to tackle this challenge, our paper proposes a novel loss called Focal Weighted Loss (FWL) with adversarial training and the compact language model MobileBERT. Our proposed loss function handles the problem of imbalanced emotion classification through Focal Weighted Loss and adversarial training and does not require large batch sizes or more computational resources. Our approach has been employed on four text emotion recognition benchmark datasets, MELD, EmoryNLP, DailyDialog and IEMOCAP demonstrating competitive performance. Extensive experiments on these benchmark datasets validate the effectiveness of our proposed FWL with adversarial training. This enables more human-like interactions on digital platforms. Our approach shows its potential to deliver competitive performance under limited resource constraints, comparable to large language models.

Characteristics and analysis of PM2.5 particles in a light-polluted atmosphere in winter

Scientific Reports Feng Hu, Xinglei Wang, Qi Li Jan 24, 2025 DOI: 10.1038/s41598-024-69615-w

Transcranial Doppler sonography follow-up study in mild vascular cognitive impairment

PLoS ONE Mariagiovanna Cantone, Manuela Pennisi, Giuseppe Lanza et al. Jan 24, 2025 DOI: 10.1371/journal.pone.0317888

Background To date, few data to transcranial Doppler sonography (TCD) are available in patients with mild vascular cognitive impairment (VCI) at risk for vascular or mixed dementia. In a previous study in patients with mild VCI and cerebral small vessels disease, a hemodynamic pattern of cerebral hypoperfusion and enhanced vascular resistance were observed; however, longitudinal data are currently lacking. Here, we perform a clinical, psychopathological, and neurosonological follow-up of patients with VCI in order to monitor any progression and to identify TCD measures to detect it. Methods From the original cohort of 161 patients, 127 with VCI (mean age 73.6 ± 7.1; 67 males) were re-evaluated after 5.0 ± 1.8 years. Namely, the Montreal Cognitive Assessment (MoCA), the 17-items Hamilton Depression Rating Scale (HDRS), and the Stroop Color-Word Interference Test (StroopT) were administered to screen for global cognitive status, to quantify depressive symptoms, and to explore executive functions, respectively. Mean blood flow velocity (MBFV), peak systolic blood flow velocity (PSV), end-diastolic blood flow velocity (EDV), pulsatility index (PI), and resistivity index (RI) were recorded from the middle cerebral artery, bilaterally. Results At follow up, patients exhibited a significant worsening of both MoCA (21.7 ± 2.1 vs. 20.7 ± 2.0) and StroopT scores (57.4 ± 19.4 vs. 59.7 ± 18.6), whereas HDRS showed an improvement, although the mean raw score remained above the cut-off value for depression (10.3 ± 6.6 vs. 9.8 ± 6.3). MBFV, PSV, and EDV showed a significant increase in PSV and PI and a reduction in EDV. When focused to younger patients (<65 years), we confirmed the significant worsening of both MoCA and StroopT but not HDRS, as well as the significant changes in PI and RI. Finally, considering the differences (D) between baseline and follow-up, the following significant correlations emerged, although with a small-to-medium effect size for all of them: positive correlation between MBFV-D and MoCA-D and between RI-D and STROOP-D, and a negative significant correlation between RI-D and MoCA-D. Conclusions Notwithstanding some limitations, such as the lack of a control group and neuroimaging data at follow-up, TCD may contribute to the early detection, monitoring, and management of VCI patients at risk for dementia. Together with compatible clinical and cognitive features, the exploration of early TCD markers that possibly indicate a higher risk of progression might represent an intriguing research direction and a significant clinical perspective.

Attention-based interactive multi-level feature fusion for named entity recognition

Scientific Reports Yiwu Xu, Yun Chen Jan 24, 2025 DOI: 10.1038/s41598-025-86718-0

Clustering analysis of Yue opera character tone trends based on quantum particle swarm optimization for fuzzy C-means

PLoS ONE Yuhang Zhang, Xiaofeng Wu, Jiawei Xu et al. Jan 24, 2025 DOI: 10.1371/journal.pone.0313065

This study develops an innovative method for analyzing and clustering tonal trends in Chinese Yue Opera to identify different vocal styles accurately. Linear interpolation is applied to process the time series data of vocal melodies, addressing inconsistent feature dimensions. The second-order difference method extracts tonal trend features. We introduce a fuzzy C-means clustering method enhanced by quantum particle swarm optimization (QPSO) to manage data uncertainties, improving classification accuracy and convergence speed. Additionally, we employ a cross-correlation function to eliminate uncertainties from tonal transition redundancies. We designed a detection algorithm using trend data to validate our clustering method, thereby enhancing the accuracy of the analysis of tonal ranges and potential models. This method detects whether Yue Opera adheres to traditional rhythmic norms and models the regularity of musical tones and vocal patterns. Simulation results reveal that our approach achieves a 91.4% accuracy in classifying vocal styles, surpassing traditional methods and demonstrating its potential for identifying various styles. This research offers technical support for Yue Opera music education and interdisciplinary research. The findings enhance the quality of artistic creation and performance in Yue Opera, ensuring its preservation and development.

The role of ultrasound combined with water bath in the establishment of animal models of rat urethral stricture

Scientific Reports Xiaojian Ye, Xianjing Lin, Yehui Chen et al. Jan 24, 2025 DOI: 10.1038/s41598-025-87511-9

Development of a multi-epitope chimeric vaccine in silico against Babesia bovis, Theileria annulata, and Anaplasma marginale using computational biology tools and reverse vaccinology approach

PLoS ONE AMAM Zonaed Siddiki, Sabreena Alam, Farhan Fuad Bin Hossen et al. Jan 24, 2025 DOI: 10.1371/journal.pone.0312262

The three rickettsial parasites- Babesia bovis, Theileria annulata and Anaplasma Marginale are responsible for causing Babesiosis, Theileriosis and Anaplasmosis among cattle. These diseases exist due to spreading of infected ticks. A large number of cattle were found to suffer from mixed infections caused by the three parasites at the same time. Due to these reasons cattle have been devoid of milk production with reduced meat availability. Hence, it is a matter of urgency for the immunity of cattle to exhibit resilience against all three rickettsial parasites. It could be possible if trials are carried out after producing a subunit chimeric vaccine against the rickettsial protozoan parasites and introducing it into the bloodstream of the cattle species. In this paper, we have used the process of reverse vaccinology to conduct a study in which we have developed a multi-epitope subunit chimeric vaccine against three protozoan parasites. We constructed three chimeric vaccine sequences from which only one chimeric vaccine construct was found to be an effective and efficient vaccine which is stable with high solubility and negative allergenicity. Following that, we performed molecular docking of the refined chimeric vaccine construct with Rp-105 and TLR-9. It was observed that the chimeric vaccines interacted with the receptors with high binding energy. Immune simulation was also performed to determine the potentiality of the chimeric vaccine for eliciting an immune response. The best-designed chimeric vaccine construct was then reverse transcribed and adapted for the host E. coli K12 strain which was later inserted into the pET28a (+) vector for the cloning and expression of the vaccine. The study could be a good initiative for the development of an effective chimeric vaccine against bovine parasites.

Acoustic emission characteristics and damage constitutive model of fractured sandstone under uniaxial compression

Scientific Reports Qiang Liu, Chao Pan, Lin Yan et al. Jan 24, 2025 DOI: 10.1038/s41598-025-85257-y

Sulfur dioxide exposure of mice induces peribronchiolar fibrosis—A defining feature of deployment-related constrictive bronchiolitis

PLoS ONE Seagal Teitz-Tennenbaum, Kayla N. Marinetti, Shayanki Lahiri et al. Jan 24, 2025 DOI: 10.1371/journal.pone.0313992

Deployment-related constrictive bronchiolitis (DRCB) has emerged as a health concern in military personnel returning from Southwest Asia. Exposure to smoke from a fire at the Al-Mishraq sulfur enrichment facility and/or burn pits was reported by a subset of Veterans diagnosed with this disorder. DRCB is characterized by thickening and fibrosis of small airways (SA) in the lung, but whether these are related to toxin inhalation remains uncertain. The aim of this study was to determine whether sulfur dioxide (SO2) exposure can induce histopathological features of DRCB. C57BL/6J mice were exposed to 50 ± 5 ppm SO2 for one hour/day for five consecutive days. Lungs from exposed and unexposed mice were evaluated on day 5, 10, and 20. Lung sections were stained using hematoxylin and eosin, Masson’s trichrome, picrosirius red (PSR), and immunofluorescence for club cell secretory protein, acetylated-α-tubulin, and Ki67. Small airway wall thickness was determined by morphometric analysis and collagen content was quantified by measuring PSR fluorescence intensity. CurveAlign and CT-FIRE were used to enumerate collagen fibers and assess fibers’ width and length, respectively. Leukocyte subpopulations were quantified by flow cytometry analysis. This protocol of SO2 exposure of mice: 1) Triggered club cell proliferation and differentiation; 2) Increased SA wall thickness by inducing subepithelial collagen deposition; and 3) Increased width, length, and number, but not density, of collagen fibers within the wall of SA. 4) Induced no peribronchiolar inflammation or respiratory bronchiolitis. Collectively, these findings implicate club cell proliferation and differentiation in the profibrotic response to SO2 and identify this SO2 exposure as a potentially effective though imperfect model for studying SA fibrosis in DRCB.

Multi-assay assessment of cytotoxicity reveals multiple mechanisms of action in 3D microtissues

Scientific Reports Ahbid Zein-Sabatto, Katerina St. Angelo, Samantha J. Madnick et al. Jan 24, 2025 DOI: 10.1038/s41598-025-86792-4

Physical measures of physical functioning as prognostic factors in predicting outcomes for neck and thoracic pain: Protocol for a systematic review

PLoS ONE Rabea Begum, Alison Rushton, Alaa El Chamaa et al. Jan 24, 2025 DOI: 10.1371/journal.pone.0316827

Background Spinal pain is prevalent and burdensome worldwide. A large proportion of patients with neck and thoracic pain experience chronic symptoms, which can significantly impact their physical functioning. Therefore, it is important to understand factors predicting outcome to inform effective examination and treatment. Knowledge of physical measures of physical functioning as prognostic factors can enhance patient-centered care and aid decision-making. The evidence regarding physical outcome measures as prognostic factors for neck and thoracic pain is unclear. The objective of this study is to summarize the evidence for physical outcome measures of physical functioning as prognostic factors in predicting outcomes in people with neck and thoracic pain. Methods and analysis This systematic review follows Cochrane guidelines and aligns with the Preferred Reporting Items for Systematic Review and Meta-Analysis Protocols (PRISMA-P). Included studies will be prospective longitudinal cohort studies in which physical measures of physical functioning are explored as prognostic factors for adults with neck and thoracic pain. A comprehensive search will be performed in key databases (MEDLINE, EMBASE, CINAHL, Scopus, and Web of Science) and the grey literature, with hand searches of key journals, and the reference lists of included studies. Two reviewers will independently perform study selection, data extraction, risk of bias assessment (QUIPS, Quality in Prognostic Studies tool), and quality assessment (Grading of Recommendations Assessment, Development, and Evaluation). Implications This systematic review will identify physical measures of physical functioning prognostic factors for neck and thoracic pain populations. Findings will inform researchers about gaps in existing evidence, and clinicians about factors to aid their clinical decisions and to enhance the overall quality of care for individuals with neck and thoracic pain.

Effective dipole model for electrostatic interactions between polarizable spherical particles in particle scale simulations

Scientific Reports Maria Giordano, Francesca O. Alfano, Francesco P. Di Maio et al. Jan 24, 2025 DOI: 10.1038/s41598-025-86181-x

Effect of bar jump height on kinetics and kinematics of take-off in agility dogs

PLoS ONE Leena Inkilä, Anna Boström, Pedro Valadão et al. Jan 24, 2025 DOI: 10.1371/journal.pone.0315907

Sport-related injuries have been reported to occur in around one-third of agility dogs. Higher bar height in competitions has been shown to increase odds of an injury. This study evaluated the effect of bar height on the kinetics and kinematics at take-off to a bar jump. Forces from fore- and hindlimb pairs were measured with force plates. A three-dimensional motion capture system was used to measure sagittal joint kinematics of the shoulder, elbow, carpus, hip, stifle, and tarsal joints, as well as limb coordination, trunk horizontal velocity, take-off distance, and take-off angle. Data were collected for 17 Border Collies at three different bar heights: 80%, 100%, and 120% of wither height. A linear mixed model was used for statistical analysis. At higher bar height, decelerative impulses were greater and accelerative impulses decreased along with greater vertical impulses from forelimb and hindlimb pairs (p<0.001). Post-hoc analyses revealed differences between all three bar heights (p<0.01), except for forelimb decelerative impulse, which did not differ between 80% and 100% heights. Sagittal range of motion was greater, through increased peak flexion or extension, at 120% bar height than at lower bar heights (p<0.05) in almost all measured limb joints. The only exceptions were leading forelimb shoulder and elbow joints and leading hindlimb hip joint. With increasing bar height, the horizontal velocity of trunk decreased (p<0.001), and take-off angle became steeper (p<0.001), with all bar heights differing from each other (p<0.01). Temporal synchronicity between trailing and leading limbs increased and craniocaudal distance decreased in forelimbs (p<0.05) and hindlimbs (p<0.01) as bar height increased. Increased vertical and decelerative impulses, as well as the greater peak flexion and extension angles of joints, may indicate greater load on the tissues at higher bar heights, which could explain the increased odds of injury at higher bar heights in agility dogs.