VGLL1 contributes to both the transcriptome and epigenome of the developing trophoblast compartment

R Ruben I. Calderon (Department of Pathology, University of California San Diego) N Nirvay Sah (Department of Pathology, University of California San Diego) M Molly Huang (Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California San Diego) S Sampada Kallol (Department of Pathology, University of California San Diego) R Ryan H. Kittle (Department of Pathology, University of California San Diego) W Walee B. Shaik (Department of Pathology, University of California San Diego) A Ahmed Abdelbaki (Department of Zoology, Faculty of Science, Zagazig University) J Jennifer N. Chousal (Department of Pathology, University of California San Diego) R Robert Morey (Department of Pathology, University of California San Diego) T Tony Bui (Department of Pathology, University of California San Diego) A Alejandra Mitre (Department of Pathology, University of California San Diego) N Norah M. E. Fogarty (Human Embryo and Stem Cell Laboratory, The Francis Crick Institute) C Claudia Gerri (Human Embryo and Stem Cell Laboratory, The Francis Crick Institute) Z Zoe Manalo (Department of Pathology, University of California San Diego) C Claire Zheng (Department of Pathology, University of California San Diego) P Peter De Hoff (Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California San Diego) P Pratik Home (Department of Pathology and Laboratory Medicine and Institute for Reproductive and Developmental Sciences, University of Kansas Medical Center) K Kathy K. Niakan H Heidi Cook-Andersen (Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California San Diego) K Kathleen M. Fisch (Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California San Diego) S Soumen Paul (Department of Pathology and Laboratory Medicine and Institute for Reproductive and Developmental Sciences, University of Kansas Medical Center) F Francesca Soncin (Department of Pathology, University of California San Diego)

Abstract

The trophectoderm (TE), the first lineage specified during mammalian development, initiates implantation and gives rise to placental trophoblasts. While animal models have elucidated key conserved signaling pathways involved in early TE specification, including bone morphogenetic protein (BMP), WNT, and HIPPO, species-specific differences during early development emphasize the need for human-specific models. We previously identified VGLL1, a coactivator of TEAD transcription factors, as a human-specific placental marker. In this study, we employed a pluripotent stem cell (PSC)-based model of TE induction by BMP4 to investigate chromatin remodeling and transcriptional dynamics during TE formation. BMP4-induced chromatin accessibility changes promoted a trophoblast gene expression program, while mesoderm lineage markers were only transiently expressed upon canonical WNT activation. We found that VGLL1 was expressed downstream of key TE transcription factors (GATA2/3, TFAP2A/C) but was essential for establishment of full trophoblast identity by up-regulating the epidermal growth factor receptor (EGFR) and reinforcing GATA3 expression through positive feedback. Notably, VGLL1 enhanced canonical WNT signaling via direct regulation of WNT receptors and effectors. We also identified KDM6B, a histone demethylase that removes H3K27me3 repressive marks, as a direct VGLL1 target. KDM6B facilitated activation of bivalent promoters associated with TE markers, linking epigenetic regulation to lineage identity. Our findings establish a mechanistic framework positioning VGLL1 as a central regulator that integrates HIPPO, BMP, and WNT signaling pathways to drive establishment of human TE.

Article Details

Volume / Issue Vol. 122, Issue 48
Published December 02, 2025
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (22)

R

Ruben I. Calderon

Department of Pathology, University of California San Diego

N

Nirvay Sah

Department of Pathology, University of California San Diego

M

Molly Huang

Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California San Diego

S

Sampada Kallol

Department of Pathology, University of California San Diego

R

Ryan H. Kittle

Department of Pathology, University of California San Diego

W

Walee B. Shaik

Department of Pathology, University of California San Diego

A

Ahmed Abdelbaki

Department of Zoology, Faculty of Science, Zagazig University

J

Jennifer N. Chousal

Department of Pathology, University of California San Diego

R

Robert Morey

Department of Pathology, University of California San Diego

T

Tony Bui

Department of Pathology, University of California San Diego

A

Alejandra Mitre

Department of Pathology, University of California San Diego

N

Norah M. E. Fogarty

Human Embryo and Stem Cell Laboratory, The Francis Crick Institute

C

Claudia Gerri

Human Embryo and Stem Cell Laboratory, The Francis Crick Institute

Z

Zoe Manalo

Department of Pathology, University of California San Diego

C

Claire Zheng

Department of Pathology, University of California San Diego

P

Peter De Hoff

Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California San Diego

P

Pratik Home

Department of Pathology and Laboratory Medicine and Institute for Reproductive and Developmental Sciences, University of Kansas Medical Center

K

Kathy K. Niakan

H

Heidi Cook-Andersen

Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California San Diego

K

Kathleen M. Fisch

Department of Obstetrics, Gynecology, and Reproductive Sciences, School of Medicine, University of California San Diego

S

Soumen Paul

Department of Pathology and Laboratory Medicine and Institute for Reproductive and Developmental Sciences, University of Kansas Medical Center

F

Francesca Soncin

Department of Pathology, University of California San Diego