Toward accurate predictions of bond-selective fluorescence spectra

P Philip A. Kocheril (Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,) R Ryan E. Leighton (Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,) N Noor Naji (Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,) D Dongkwan Lee (Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,) H Haomin Wang J Jiajun Du (Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,) L Lu Wei

Abstract

Vibrational-encoded fluorescence spectro-microscopies are emerging as powerful tools for studying molecular vibrations with the unparalleled sensitivity of fluorescence spectroscopy. We recently described one such technique, termed bond-selective fluorescence-detected infrared-excited (BonFIRE) spectro-microscopy. Currently, prospects of BonFIRE toward rational molecular design are limited, but they have the potential to be assisted by computational tools. In this perspective, we provide a brief overview of the theory of BonFIRE spectroscopy. We then describe a fully automated computational pipeline for calculating BonFIRE spectra, reproducing key features of experimental results. Finally, we highlight a few potential applications of computational methods for vibrational-encoded fluorescence spectro-microscopies and their broader implications for chemistry and biology.

Article Details

Volume / Issue Vol. 164, Issue 13
Published April 07, 2026
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (7)

P

Philip A. Kocheril

Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,

R

Ryan E. Leighton

Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,

N

Noor Naji

Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,

D

Dongkwan Lee

Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,

H

Haomin Wang

J

Jiajun Du

Division of Chemistry and Chemical Engineering, California Institute of Technology , Pasadena, California 91125,

L

Lu Wei