The Helicobacter pylori AI-clinician harnesses artificial intelligence to personalise H. pylori treatment recommendations

K Kyle Higgins O Olga P. Nyssen J Joshua Southern I Ivan Laponogov A Ana Miralles Marco M Manuel Cabeza-Segura E Elena Jiménez Martí J Josefa Castillo M Marcis Leja (Institute of Clinical and Preventive Medicine, University of Latvia, Riga, Latvia) I Inese Poļaka F Fatima Carneiro C Ceu Figueiredo R Rui M. Ferreira R Rita Barros L Leticia Moreira M Miriam Cuatrecasas G Glòria Fernandez-Esparrach T Tamara Matysiak-Budnik (Institut des Maladies de l’Appareil Digestif, Hepato-Gastroenterology and Digestive Oncology, Nantes University Hospital, Nantes, France) J Jerome Martin L Laimas Jonaitis J Juozas Kupcinskas P Paulius Jonaitis M Mario Dinis-Ribeiro (Portuguese Institute of Oncology of Porto, Porto Comprehensive Cancer Center, Porto, Portugal) M Miguel Coimbra A Ana Carina Pereira F Filipa Fontes M Manon C. W. Spaander J Judith Honing S Stefano Sedola J Junior Andrea Pescino Z Zorana Maravic (Digestive Cancers Europe, Brussels) A Ana Martins D Dennis Veselkov J Javier P. Gisbert (Gastroenterology Unit, Hospital Universitario de La Princesa, Instituto de Investigación Sanitaria Princesa, Universidad Autónoma de Madrid, and Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas, Madrid) T Tania Fleitas Kanonnikoff K Kirill Veselkov

Abstract

Abstract Helicobacter pylori (H. pylori) is the most common carcinogenic pathogen globally and the leading cause of gastric cancer. Here, we develop a reinforcement learning-based AI Clinician system to personalise treatment selection and evaluate its ability to improve eradication success compared to clinician-prescribed therapies. The model is trained and internally validated on 38,049 patients from the retrospective European Registry on Helicobacter pylori Management (Hp-EuReg), using independent state deep Q-learning (isDQN) to recommend optimal therapies based on patient characteristics such as age, sex, antibiotic allergies, country, and pre-treatment indication. In internal validation using real-world Hp-EuReg data, AI-recommended therapies achieve a 94.1% success rate (95% CI: 93.2–95.0%) versus 88.1% (95% CI: 87.7–88.4%) for clinician-prescribed therapies not aligned with AI suggestions—an improvement of 6.0%. Results are replicated in an external validation cohort (n = 7186), confirming generalisability. The AI system identifies optimal treatment strategies in key subgroups: 65% (n = 24,923) are recommended bismuth-based therapies, and 15% (n = 5898) non-bismuth quadruple therapies. Random forest modelling identifies region and concurrent medications as patient-specific drivers of AI recommendations. With nearly half the global population likely to contract H. pylori, this approach lays the foundation for future prospective clinical validation and shows the potential of AI to support clinical decision-making, enhance outcomes, and reduce gastric cancer burden.

Article Details

Volume / Issue Vol. 16, Issue 1
Published July 14, 2025
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (36)

K

Kyle Higgins

O

Olga P. Nyssen

J

Joshua Southern

I

Ivan Laponogov

A

Ana Miralles Marco

M

Manuel Cabeza-Segura

E

Elena Jiménez Martí

J

Josefa Castillo

M

Marcis Leja

Institute of Clinical and Preventive Medicine, University of Latvia, Riga, Latvia

I

Inese Poļaka

F

Fatima Carneiro

C

Ceu Figueiredo

R

Rui M. Ferreira

R

Rita Barros

L

Leticia Moreira

M

Miriam Cuatrecasas

G

Glòria Fernandez-Esparrach

T

Tamara Matysiak-Budnik

Institut des Maladies de l’Appareil Digestif, Hepato-Gastroenterology and Digestive Oncology, Nantes University Hospital, Nantes, France

J

Jerome Martin

L

Laimas Jonaitis

J

Juozas Kupcinskas

P

Paulius Jonaitis

M

Mario Dinis-Ribeiro

Portuguese Institute of Oncology of Porto, Porto Comprehensive Cancer Center, Porto, Portugal

M

Miguel Coimbra

A

Ana Carina Pereira

F

Filipa Fontes

M

Manon C. W. Spaander

J

Judith Honing

S

Stefano Sedola

J

Junior Andrea Pescino

Z

Zorana Maravic

Digestive Cancers Europe, Brussels

A

Ana Martins

D

Dennis Veselkov

J

Javier P. Gisbert

Gastroenterology Unit, Hospital Universitario de La Princesa, Instituto de Investigación Sanitaria Princesa, Universidad Autónoma de Madrid, and Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas, Madrid

T

Tania Fleitas Kanonnikoff

K

Kirill Veselkov