The developmental factor TBX3 engages with the Wnt/β-catenin transcriptional complex in colorectal cancer to regulate metastasis genes

A Amaia Jauregi-Miguel (Wallenberg Centre for Molecular Medicine, Linköping University) S Simon Söderholm (Wallenberg Centre for Molecular Medicine, Linköping University) T Tamina Weiss (Wallenberg Centre for Molecular Medicine, Linköping University) A Anna Nordin (Wallenberg Centre for Molecular Medicine, Linköping University) V Valeria Ghezzi (Wallenberg Centre for Molecular Medicine, Linköping University) S Salome M. Brütsch (Wallenberg Centre for Molecular Medicine, Linköping University) P Pierfrancesco Pagella (Wallenberg Centre for Molecular Medicine, Linköping University) Y Yorick van de Grift (Wallenberg Centre for Molecular Medicine, Linköping University) G Gianluca Zambanini (Wallenberg Centre for Molecular Medicine, Linköping University) J Jacopo Ulisse (Wallenberg Centre for Molecular Medicine, Linköping University) A Alessandro Mattia (Wallenberg Centre for Molecular Medicine, Linköping University) R Ruslan Deviatiiarov (Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University) E Elena Faustini (Wallenberg Centre for Molecular Medicine, Linköping University) L Lavanya Moparthi W Wenjing Zhong (Wallenberg Centre for Molecular Medicine, Linköping University) B Bergthor Björnsson (Department of Surgery in Linköping, Linköping University) P Per Sandström (Department of Surgery in Linköping, Linköping University) E Erik Lundqvist (Department of Biomedicine and Clinical Sciences, Linköping University) F Francisca Lottersberger S Stefan Koch A Andreas E. Moor (Department of Biosystems Science and Engineering, Federal Institute of Technology Zürich) X Xiao-Feng Sun (Department of Oncology, Division of Surgery, Orthopedics and Oncology, Faculty of Medicine and Health Sciences, Linköping University) E Eleonore von Castelmur (Wallenberg Centre for Molecular Medicine, Linköping University) G Guojun Sheng C Claudio Cantù (Wallenberg Centre for Molecular Medicine, Linköping University)

Abstract

Wnt signaling orchestrates gene expression in a plethora of processes during development and adult cell homeostasis via the action of nuclear β-catenin. Yet, little is known about how β-catenin generates context-specific transcriptional outcomes. Understanding this will reveal how aberrant Wnt/β-catenin signaling causes neoplasia specifically of the colorectal epithelium. We have previously identified the transcription factor TBX3 as a tissue-specific component of the Wnt/β-catenin nuclear complex during mouse forelimb development. In this study, we show that TBX3 is functionally active in human colorectal cancer (CRC). Here, genome-wide binding and transcriptomics analyses reveal that TBX3 regulates cancer metastasis genes in cooperation with Wnt/β-catenin. Proteomics proximity labeling performed across Wnt pathway activation shows that TBX3 engages with several transcription factors and chromatin remodeling complexes found at Wnt responsive elements (WRE). Protein sequence and structure analysis of TBX3 revealed short motifs, including an exposed Asn-Pro-Phe (NPF), that mediate these interactions. Deletion of these motifs abrogates TBX3’s proximity to its protein partners and its ability to enhance the Wnt-dependent transcription. TBX3 emerges as a key modulator of the oncogenic activity of Wnt/β-catenin in CRC, and its mechanism of action exposes protein-interaction surfaces as putative druggable targets.

Article Details

Volume / Issue Vol. 122, Issue 19
Published May 13, 2025
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (25)

A

Amaia Jauregi-Miguel

Wallenberg Centre for Molecular Medicine, Linköping University

S

Simon Söderholm

Wallenberg Centre for Molecular Medicine, Linköping University

T

Tamina Weiss

Wallenberg Centre for Molecular Medicine, Linköping University

A

Anna Nordin

Wallenberg Centre for Molecular Medicine, Linköping University

V

Valeria Ghezzi

Wallenberg Centre for Molecular Medicine, Linköping University

S

Salome M. Brütsch

Wallenberg Centre for Molecular Medicine, Linköping University

P

Pierfrancesco Pagella

Wallenberg Centre for Molecular Medicine, Linköping University

Y

Yorick van de Grift

Wallenberg Centre for Molecular Medicine, Linköping University

G

Gianluca Zambanini

Wallenberg Centre for Molecular Medicine, Linköping University

J

Jacopo Ulisse

Wallenberg Centre for Molecular Medicine, Linköping University

A

Alessandro Mattia

Wallenberg Centre for Molecular Medicine, Linköping University

R

Ruslan Deviatiiarov

Regulatory Genomics Research Center, Institute of Fundamental Medicine and Biology, Kazan Federal University

E

Elena Faustini

Wallenberg Centre for Molecular Medicine, Linköping University

L

Lavanya Moparthi

W

Wenjing Zhong

Wallenberg Centre for Molecular Medicine, Linköping University

B

Bergthor Björnsson

Department of Surgery in Linköping, Linköping University

P

Per Sandström

Department of Surgery in Linköping, Linköping University

E

Erik Lundqvist

Department of Biomedicine and Clinical Sciences, Linköping University

F

Francisca Lottersberger

S

Stefan Koch

A

Andreas E. Moor

Department of Biosystems Science and Engineering, Federal Institute of Technology Zürich

X

Xiao-Feng Sun

Department of Oncology, Division of Surgery, Orthopedics and Oncology, Faculty of Medicine and Health Sciences, Linköping University

E

Eleonore von Castelmur

Wallenberg Centre for Molecular Medicine, Linköping University

G

Guojun Sheng

C

Claudio Cantù

Wallenberg Centre for Molecular Medicine, Linköping University