The bcc coating of Lennard-Jones crystal nuclei vanishes with a change of local structure detection algorithm

W Willem Gispen (Soft Condensed Matter and Biophysics, Debye Institute for Nanomaterials Science, Utrecht University 1 , Princetonplein 1, 3584 CC Utrecht,) A Alberto Pérez de Alba Ortíz (Computational Chemistry, Van ’t Hoff Institute for Molecular Sciences and Amsterdam Center for Multiscale Modeling, University of Amsterdam 1 , Science Park 904, 1098 XH Amsterdam,) M Marjolein Dijkstra (Soft Condensed Matter and Biophysics)

Abstract

Since the influential work of ten Wolde, Ruiz-Montero, and Frenkel [Phys. Rev. Lett. 75, 2714 (1995)], crystal nucleation from a Lennard-Jones fluid has been regarded as a paradigmatic example of metastable crystal ordering at the surface of a critical nucleus. We apply seven commonly used local structure detection algorithms to characterize crystal nuclei obtained from transition path sampling simulations. The polymorph composition of these nuclei varies significantly depending on the algorithm used. Our results indicate that one should be very careful when characterizing the local structure near solid–solid and solid–fluid interfaces. Particles near such interfaces exhibit a local structure distinct from that of bulk fluid or bulk crystal phases. We argue that incorporating outlier detection into the local structure detection method is beneficial, leading to greater confidence in the classification results. Interestingly, the bcc coating nearly disappears when adopting a machine learning method with outlier detection.

Article Details

Volume / Issue Vol. 162, Issue 2
Published January 14, 2025
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (3)

W

Willem Gispen

Soft Condensed Matter and Biophysics, Debye Institute for Nanomaterials Science, Utrecht University 1 , Princetonplein 1, 3584 CC Utrecht,

A

Alberto Pérez de Alba Ortíz

Computational Chemistry, Van ’t Hoff Institute for Molecular Sciences and Amsterdam Center for Multiscale Modeling, University of Amsterdam 1 , Science Park 904, 1098 XH Amsterdam,

M

Marjolein Dijkstra

Soft Condensed Matter and Biophysics