SLIC-Former: a superpixel-guided transformer framework for automatic liver segmentation in CT images

S Sarah F. Elqersh A Amira Y. Haikal M Mahmoud M. Saafan N Noha A. Sakr

Abstract

Abstract Accurate and efficient liver segmentation from computed tomography (CT) images remains a critical challenging task due to the organ’s irregular shape, variable intensity, and lies close to surrounding organs with similar appearance. In this study, we propose SLIC-Former, a superpixel-guided transformer framework for automatic liver segmentation in abdominal CT scans. The method replaces fixed square image patches with adaptive superpixels generated by the Simple Linear Iterative Clustering (SLIC) algorithm, so that each token follows anatomical boundaries and reduces redundant computation. Quantitative evaluation on the Liver Tumor Segmentation (LiTS) dataset demonstrated strong segmentation performance, achieving a Dice coefficient of 0.93, an IoU of 0.87, and a VOE of 13.5%, indicating high overlap with expert annotations. Qualitative results confirm that the model produces smooth and coherent liver masks. Overall, SLIC-Former offers an accurate and computationally efficient tool for automatic liver segmentation and provides a promising basis for future extensions to more organs, larger datasets, and clinical decision-support systems.

Article Details

Volume / Issue Vol. 16, Issue 1
Published July 10, 2026
ISSN 2045-2322
Publisher Nature Portfolio

Journal Info

Scientific Reports

Nature Portfolio

ISSN: 2045-2322 Open Access Life Sciences

Authors (4)

S

Sarah F. Elqersh

A

Amira Y. Haikal

M

Mahmoud M. Saafan

N

Noha A. Sakr