Signatures of glassy dynamics in highly ordered lipid bilayers with emergence of soft dynamic channels

H Harini SureshKumar (Molecular Biophysics Unit, Indian Institute of Science 1 , Bangalore, KA 560012,) S Sahithya S. Iyer (Department of Chemistry, The University of Chicago 2 , Chicago, Illinois 60637,) A Atreyee Banerjee (Max Planck Institute for Polymer Research 1 , Ackermannweg 10, 55128 Mainz,) P Prathyush Poduval (Department of Physics, Indian Institute of Science 5 , Bangalore, Karnataka 560012,) E Edward Lyman A Anand Srivastava

Abstract

Over the last few decades, extensive investigations on spatial and dynamic heterogeneity have been performed on carefully reconstituted biological lipid membranes. Characterizing the molecular features in heterogeneous membranes is extremely challenging due to the experimentally inaccessible time- and length-scales of these emergent systems. In this context, simulations can provide important insights into molecular-level interactions leading to membrane heterogeneity and associated functions. To that end, we use the non-affine displacement (NAD) framework (a concept borrowed from the physics of granular materials) to faithfully capture molecular-scale local membrane order in simulated heterogeneous bilayers. In our latest application of NAD, we investigate the temperature-dependent spatial and temporal organization on microsecond trajectories of liquid-ordered bilayer systems at all-atom resolution (DPPC/DOPC/CHOL: 0.55:0.15:0.30; 40 × 40 nm2 with a total of 5600 lipids and 2 × 106 atoms). Lateral organization in these large bilayer patches shows noticeable dynamic heterogeneity despite their liquid-ordered nature. Moreover, our NAD analyses reveal soft fluid channels within the tightly packed membrane reminiscent of the classical two-component Kob–Andersen glass-forming binary mixture. Hence, we characterized these systems using classical glass physics markers for dynamic heterogeneities such as overlap, four-point susceptibility, Van Hove, and intermediate scattering functions to quantify the multiple time scales underlying the lipid dynamics. Our analyses reveal that highly ordered membrane systems can have glass-like dynamics with distinct soft fluid channels inside them. Biologically, these dynamic channels could act as conduits for facilitating molecular encounters for biological functions even in highly ordered phases such as lipid nanodomains and rafts.

Article Details

Volume / Issue Vol. 162, Issue 14
Published April 14, 2025
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (6)

H

Harini SureshKumar

Molecular Biophysics Unit, Indian Institute of Science 1 , Bangalore, KA 560012,

S

Sahithya S. Iyer

Department of Chemistry, The University of Chicago 2 , Chicago, Illinois 60637,

A

Atreyee Banerjee

Max Planck Institute for Polymer Research 1 , Ackermannweg 10, 55128 Mainz,

P

Prathyush Poduval

Department of Physics, Indian Institute of Science 5 , Bangalore, Karnataka 560012,

E

Edward Lyman

A

Anand Srivastava