Side‐Chain Macrocyclization in Ahp‐Bicyclodepsipeptides Biosynthesis Involves Cytochrome P450‐Catalyzed Sequential Aromatic Hydroxylation and C─N Coupling

Q Qiang Dong N Niandi Zhang (NHC Key Laboratory of Biotechnology for Microbial Drugs, State Key Laboratory of Bioactive Substance & Function of Natural Medicines, Institute of Medicinal Biotechnology) X Xiaorong Chen J Jiayi Xuan (School of Pharmaceutical Sciences Southern Medical University Guangzhou 510515 China) T Tai Huang (School of Pharmaceutical Sciences Southern Medical University Guangzhou 510515 China) B Bo Niu Z Zhefei Xu (Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica Chinese Academy of Sciences Zhongshan Guangdong 528400 China) Q Qingsong Hu (Materials Science & Applied Physics Department, Division of Physical Science and Engineering (PSE)) J Jiayi Chen (Center for AIE Research, College of Materials Science and Engineering) Z Zhuan Zhang (NHC Key Laboratory of Biotechnology for Microbial Drugs, CAMS Key Laboratory of Synthetic Biology for Drug Innovation, State Key Laboratory of Bioactive Substance & Function of Natural Medicines) S Song Meng (Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica Chinese Academy of Sciences Zhongshan Guangdong 528400 China)

Abstract

Abstract We report the biosynthesis of FR901277 ( 1 ) and delmomycin A2 ( 2 ), two 3‐amino‐6‐hydroxypiperidone (Ahp)‐containing bicyclodepsipeptides featuring an N‐C bridge linking the citrulline and tyrosine residues. This intriguing side‐chain macrocyclization is catalyzed by Dlm16, a cytochrome P450 monooxygenase (CYP450), through a sequential process initiated by ortho‐hydroxylation of the tyrosine ring, followed by intramolecular C─N coupling between the resulting catechol moiety and the terminal NH 2 of the ureido group. Structure‐function analyses and site‐directed mutagenesis confirmed the catalytic importance of identified key residues, enabling the proposal of plausible macrocyclization mechanisms. Functional characterization of eight additional Dlm16 homologs further revealed a CYP450 subfamily capable of catalyzing C─N bond formation, underscoring the prevalence of this unusual macrocyclization in cyclodepsipeptide biosynthesis. Our work highlights nature's strategies for macrocycle construction and provides another example of CYP450‐catalyzed C─N coupling via direct C─H functionalization.

Article Details

Volume / Issue Vol. 64, Issue 50
Published December 08, 2025
ISSN 1433-7851
Publisher Wiley

Journal Info

Angewandte Chemie International Edition

Wiley

ISSN: 1433-7851 Physical Sciences

Authors (11)

Q

Qiang Dong

N

Niandi Zhang

NHC Key Laboratory of Biotechnology for Microbial Drugs, State Key Laboratory of Bioactive Substance & Function of Natural Medicines, Institute of Medicinal Biotechnology

X

Xiaorong Chen

J

Jiayi Xuan

School of Pharmaceutical Sciences Southern Medical University Guangzhou 510515 China

T

Tai Huang

School of Pharmaceutical Sciences Southern Medical University Guangzhou 510515 China

B

Bo Niu

Z

Zhefei Xu

Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica Chinese Academy of Sciences Zhongshan Guangdong 528400 China

Q

Qingsong Hu

Materials Science & Applied Physics Department, Division of Physical Science and Engineering (PSE)

J

Jiayi Chen

Center for AIE Research, College of Materials Science and Engineering

Z

Zhuan Zhang

NHC Key Laboratory of Biotechnology for Microbial Drugs, CAMS Key Laboratory of Synthetic Biology for Drug Innovation, State Key Laboratory of Bioactive Substance & Function of Natural Medicines

S

Song Meng

Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica Chinese Academy of Sciences Zhongshan Guangdong 528400 China