Scalable Boltzmann generators for equilibrium sampling of large-scale materials

M Maximilian Schebek (Department of Physics, Freie Universität Berlin 1 , 14195 Berlin,) F Frank Noé (Department of Physics, Freie Universität Berlin 1 , 14195 Berlin,) J Jutta Rogal (Initiative for Computational Catalysis, Flatiron Institute 7 , New York, New York 10010,)

Abstract

Abstract Generating equilibrium ensembles of structures is essential for modeling molecules and materials, yet traditional simulators like molecular dynamics suffer from limited sampling efficiency. Boltzmann Generators introduced the concept of one-shot deep learning for equilibrium sampling, but scalability to large systems has remained a major challenge. Here, we overcome this scaling limitation with a Boltzmann Generator architecture that can model large materials systems. Our approach combines augmented coupling flows with graph neural networks to exploit local environments, enabling energy-based training and rapid inference. Compared to previous designs, it trains faster, uses fewer resources, and achieves superior sampling efficiency. Crucially, it transfers to much larger system sizes, allowing efficient sampling of materials with simulation cells exceeding a thousand atoms. We demonstrate its capabilities on Lennard-Jones crystals, mW water ice phases, and the silicon phase diagram, producing accurate equilibrium ensembles and free energies across scales where finite-size effects vanish.

Article Details

Volume / Issue Vol. 17, Issue 1
Published June 05, 2026
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (3)

M

Maximilian Schebek

Department of Physics, Freie Universität Berlin 1 , 14195 Berlin,

F

Frank Noé

Department of Physics, Freie Universität Berlin 1 , 14195 Berlin,

J

Jutta Rogal

Initiative for Computational Catalysis, Flatiron Institute 7 , New York, New York 10010,