SARS-CoV-2 infection dynamics in a MHCI-mismatched lung transplant recipient

J Jonas Fuchs V Vivien Karl I Ina Hettich J Jaime Alvarado D Daniel Eckert L Lena Jaki A Ann-Kathrin Kohl A Anastasia Kremser A Anastasija Maks C Charlott Terschluse P Prerana Agarwal F Florian Emmerich S Sebastian Fähndrich A Annabelle Flügler D Daniel Hornuss J Johannes Kalbhenn N Nikolaus Kneidinger I Inga Lau A Achim Lother I Isabelle Moneke D David Schibilsky E Elisabeth Schygulla N Nils Venhoff G Gernot Zissel M Martin Czerny D Daniela Huzly G Georg Kochs C Christoph Neumann-Haefelin B Bernward Passlick D Daiana Stolz (Clinic of Respiratory Medicine, Faculty of Medicine, University of Freiburg, Freiburg, Germany) R Robert Thimme M Marcus Panning M Maike Hofmann B Björn C. Frye

Abstract

Abstract A 48-year-old patient underwent lung transplantation because of severe COVID-19, which aggravated his underlying interstitial lung disease, despite the presence of detectable SARS-CoV-2. Subsequently, the graft is re-infected early in the post-procedural phase, leading to viral persistence for more than five months. By analyzing viral evolution and effector immune response within the transplanted organ, we observe three main findings. First, virus evolution differs in the transplanted organ compared to that in the upper respiratory tract and is affected by monoclonal SARS-CoV-2-specific antibodies and molnupiravir. Second, we show the potential clinical relevance of T cell HLA restriction that may facilitate viral clearance in the upper respiratory tract compared to the ongoing viral replication in the HLA mismatch organ. Third, close monitoring and modulation of immunosuppressive and antiviral therapy enables viral clearance in a lung transplantation setting despite incomplete SARS-CoV-2 clearance prior to transplantation.

Article Details

Volume / Issue Vol. 16, Issue 1
Published September 16, 2025
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (34)

J

Jonas Fuchs

V

Vivien Karl

I

Ina Hettich

J

Jaime Alvarado

D

Daniel Eckert

L

Lena Jaki

A

Ann-Kathrin Kohl

A

Anastasia Kremser

A

Anastasija Maks

C

Charlott Terschluse

P

Prerana Agarwal

F

Florian Emmerich

S

Sebastian Fähndrich

A

Annabelle Flügler

D

Daniel Hornuss

J

Johannes Kalbhenn

N

Nikolaus Kneidinger

I

Inga Lau

A

Achim Lother

I

Isabelle Moneke

D

David Schibilsky

E

Elisabeth Schygulla

N

Nils Venhoff

G

Gernot Zissel

M

Martin Czerny

D

Daniela Huzly

G

Georg Kochs

C

Christoph Neumann-Haefelin

B

Bernward Passlick

D

Daiana Stolz

Clinic of Respiratory Medicine, Faculty of Medicine, University of Freiburg, Freiburg, Germany

R

Robert Thimme

M

Marcus Panning

M

Maike Hofmann

B

Björn C. Frye