Reverse engineering of BNIP3 identifies a mitochondrial protective peptide

U Ulrike B. Hendgen-Cotta A Anna Roth C Christine Beuck (Faculty of Biology) D Daniel Messiha S Stephan Settelmeier S Shah Bahrullah Shah S Sebastian Korste K Kenny Bravo-Rodriguez M Mike Blueggel (Faculty of Biology) F Feyza Cansiz L Luiza Martins Nascentes Melo J Jonas Roesler S Sven W. Meckelmann O Oliver J. Schmitz F Farnusch Kaschani M Markus Kaiser S Sonja Esfeld O Omar El Bounkari J Jürgen Bernhagen S Sophie Brameyer K Kirsten Jung (Institute of Evolutionary Ecology and Conservation Genomics, Department of Biology, Ulm University) L Linda-Isabell Schmitt M Markus Leo T Tim Hagenacker M Matthias Totzeck T Thomas Minor M Michael Ehrmann A Alpaslan Tasdogan P Peter Bayer (Faculty of Biology) T Tienush Rassaf

Abstract

Abstract Recent advances in mitochondrial network dynamic and signalling highlight mitochondria as key therapeutic targets across diverse diseases. Yet, high drug development failure rates reflect an incomplete understanding of upstream molecular regulators of mitochondrial fate. Here, we address this gap by reverse engineering of the BH3-only protein BNIP3. Structural modelling and sequence–function analyses of its N-terminus identify a critical functional domain and amino acid hotspots that directly activate BCL-2 executioner proteins, triggering mitochondrial cell death. Leveraging these insights, we develop a BNIP3 antagonist peptide (B-017) that disrupts interactions between BNIP3 and BCL-2 executioner proteins, preserving mitochondrial integrity. B-017 demonstrates target specificity, a favourable safety profile, and robust suppression of cell death signalling in human cells. In clinically relevant animal models, it reduces tissue damage in the heart, brain, and liver. Together, these findings position B-017 as a promising therapeutic candidate targeting mitochondrial dysfunction.

Article Details

Volume / Issue Vol. 17, Issue 1
Published June 17, 2026
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (30)

U

Ulrike B. Hendgen-Cotta

A

Anna Roth

C

Christine Beuck

Faculty of Biology

D

Daniel Messiha

S

Stephan Settelmeier

S

Shah Bahrullah Shah

S

Sebastian Korste

K

Kenny Bravo-Rodriguez

M

Mike Blueggel

Faculty of Biology

F

Feyza Cansiz

L

Luiza Martins Nascentes Melo

J

Jonas Roesler

S

Sven W. Meckelmann

O

Oliver J. Schmitz

F

Farnusch Kaschani

M

Markus Kaiser

S

Sonja Esfeld

O

Omar El Bounkari

J

Jürgen Bernhagen

S

Sophie Brameyer

K

Kirsten Jung

Institute of Evolutionary Ecology and Conservation Genomics, Department of Biology, Ulm University

L

Linda-Isabell Schmitt

M

Markus Leo

T

Tim Hagenacker

M

Matthias Totzeck

T

Thomas Minor

M

Michael Ehrmann

A

Alpaslan Tasdogan

P

Peter Bayer

Faculty of Biology

T

Tienush Rassaf