Reactivation of the silenced <i>BASP1</i> gene suppresses oncogenic WNT signaling in human colorectal cancer cells

L Leonie I. Weber (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) L Lea E. Timpen (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) A Anna-Sophia Egger-Hörschinger (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) P Philemon Schöpf (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) N Nesin D. Ayhan (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) D David Demmel (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) M Madlen Hotze (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) Y Yang Zhang M Mahdi Mehrabi (Otto Loewi Research Center, Division of Immunology, Medical University of Graz) K Kane Puglisi (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) E Eduard Stefan (Institute of Molecular Biology and Center for Molecular Biosciences (CMBI), University of Innsbruck) N Nassim Ghaffari-Tabrizi-Wizsy (Otto Loewi Research Center─Division of Immunology, Research Unit CAM Lab) J José M. Ramos-Pittol (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) M Marcel Kwiatkowski (Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck) M Markus Hartl (Max Perutz Labs, Mass Spectrometry Facility, Vienna Biocenter Campus)

Abstract

Starting from human colon cancer cells showing aberrant WNT/β-catenin/TCF signaling, hyperactivated MYC, and silenced BASP1 , we generated stable cell lines overexpressing BASP1 , either ectopically, or by reactivating the dormant BASP1 promoter using a lentiviral CRISPR-based system. BASP1 encodes a neuronal signaling protein and transcriptional corepressor, from which tumor-suppressive functions have been described in avian cell systems and in multiple human cancer cell types. Proteome and transcriptome analyses revealed activation of several tumor and metastasis suppressors in BASP1-expressing cells, which also show strong repression of the transformed phenotype in terms of contact inhibition, anchorage-independent growth, and tumor formation. Cells with reactivated BASP1 display a flat and differentiated morphology with enhanced migratory potential, accompanied by expression of multiple genes implicated in actin polymerization, focal adhesion, and neuronal migration. Furthermore, MYC protein expression is substantially repressed due to BASP1-mediated transcriptional MYC downregulation involving BASP1 interaction with β-catenin and binding to the MYC promoter. Upon BASP1 activation, multiple key proteins of the canonical WNT signaling pathway become suppressed. One of these BASP1 targets is the protein kinase TNIK catalyzing phosphorylation of TCF7L2, the latter required for transcriptional MYC activation. Results obtained with a preclinical TNIK inhibitor in human colorectal cancer cells show efficient abrogation of MYC expression and consequently impaired dimerization with its interaction partner MAX. The antagonistic BASP1 effect on MYC and the MYC dependency on TNIK could enhance the development of strategies to interfere with oncogenic functions of the cancer driver MYC.

Article Details

Volume / Issue Vol. 123, Issue 10
Published March 10, 2026
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (15)

L

Leonie I. Weber

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

L

Lea E. Timpen

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

A

Anna-Sophia Egger-Hörschinger

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

P

Philemon Schöpf

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

N

Nesin D. Ayhan

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

D

David Demmel

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

M

Madlen Hotze

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

Y

Yang Zhang

M

Mahdi Mehrabi

Otto Loewi Research Center, Division of Immunology, Medical University of Graz

K

Kane Puglisi

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

E

Eduard Stefan

Institute of Molecular Biology and Center for Molecular Biosciences (CMBI), University of Innsbruck

N

Nassim Ghaffari-Tabrizi-Wizsy

Otto Loewi Research Center─Division of Immunology, Research Unit CAM Lab

J

José M. Ramos-Pittol

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

M

Marcel Kwiatkowski

Institute of Biochemistry, Faculty of Chemistry and Pharmacy, University of Innsbruck

M

Markus Hartl

Max Perutz Labs, Mass Spectrometry Facility, Vienna Biocenter Campus