Predicting Reaction Feasibility and Selectivity of Aromatic C─H Thianthrenation with a QM–ML Hybrid Approach

L Lukas M. Sigmund (Molecular AI, Discovery Sciences BioPharmaceuticals R&D AstraZeneca Mölndal Sweden) T Tina Seifert (Compound Synthesis and Management Discovery Sciences R&D AstraZeneca Gothenburg Pepparedsleden 1 Mölndal 43183 Sweden) R Riya Halder (Medicinal Chemistry Research and Early Development Cardiovascular Renal and Metabolism (CVRM) BioPharmaceuticals R&D AstraZeneca Gothenburg Pepparedsleden 1 Mölndal 43183 Sweden) G Giulia Bergonzini (Compound Synthesis and Management, Discovery Sciences BioPharmaceuticals R&D AstraZeneca Mölndal Sweden) M Magnus J. Johansson (Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, Gothenburg, SE-43183 Mölndal, Sweden) P Per‐Ola Norrby (Data Science & Modelling Pharmaceutical Sciences R&D AstraZeneca Gothenburg Pepparedsleden 1 Mölndal 43183 Sweden) K Kjell Jorner (Institute of Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, Zurich 8093, Switzerland) M Mikhail Kabeshov (Molecular AI, Discovery Sciences BioPharmaceuticals R&D AstraZeneca Mölndal Sweden)

Abstract

Abstract The direct thianthrenation of aromatic C─H bonds is a valuable late‐stage functionalization strategy that can assist, for example, the development of new drugs. We herein present a predictive computational model for this reaction, denoted PATTCH, which is based on semiempirical quantum mechanics and machine learning. It classifies each C aromatic –H unit either as reactive or not with an accuracy of above 90%. It can address both the site‐selectivity and reaction feasibility question associated with the thianthrenation protocol. First, this was achieved by selecting carefully engineered features, which take into account the electronic and steric influence on the site‐selectivity. Second, parallel experimentation was used to supplement the available literature data with 54 new negative reactions (unsuccessful thianthrenation), which we show was instrumental for developing the PATTCH tool. Ultimately, we successfully applied the model to a challenging test set encompassing the differentiation between carbocycle versus heterocycle functionalization, the identification of substrates that were reported to result in a mixture of isomeric products, and to molecules that could not be thianthrenated. The computational predictions were experimentally validated. The PATTCH tool can be obtained free of charge from https://github.com/MolecularAI/thianthrenation_prediction .

Article Details

Volume / Issue Vol. 64, Issue 44
Published October 27, 2025
ISSN 1433-7851
Publisher Wiley

Journal Info

Angewandte Chemie International Edition

Wiley

ISSN: 1433-7851 Physical Sciences

Authors (8)

L

Lukas M. Sigmund

Molecular AI, Discovery Sciences BioPharmaceuticals R&D AstraZeneca Mölndal Sweden

T

Tina Seifert

Compound Synthesis and Management Discovery Sciences R&D AstraZeneca Gothenburg Pepparedsleden 1 Mölndal 43183 Sweden

R

Riya Halder

Medicinal Chemistry Research and Early Development Cardiovascular Renal and Metabolism (CVRM) BioPharmaceuticals R&D AstraZeneca Gothenburg Pepparedsleden 1 Mölndal 43183 Sweden

G

Giulia Bergonzini

Compound Synthesis and Management, Discovery Sciences BioPharmaceuticals R&D AstraZeneca Mölndal Sweden

M

Magnus J. Johansson

Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, Gothenburg, SE-43183 Mölndal, Sweden

P

Per‐Ola Norrby

Data Science & Modelling Pharmaceutical Sciences R&D AstraZeneca Gothenburg Pepparedsleden 1 Mölndal 43183 Sweden

K

Kjell Jorner

Institute of Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zurich, Vladimir-Prelog-Weg 1, Zurich 8093, Switzerland

M

Mikhail Kabeshov

Molecular AI, Discovery Sciences BioPharmaceuticals R&D AstraZeneca Mölndal Sweden