pH-antenna residues trigger a large-scale conformational change in the large extracellular loop domain of the CD81 human receptor

C C. Risueño (Structure and Cell Biology of Viruses Lab, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA) 1 , Derio,) I I. Carbajo (Materials Physics Center (CFM-MPC) 3 , Paseo Manuel de Lardizabal, 5-E-20018 Donostia-San Sebastián, Gipuzkoa,) D D. Charro (Structure and Cell Biology of Viruses Lab, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA) 1 , Derio,) N N. G. A. Abrescia (Structure and Cell Biology of Viruses Lab, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA) 1 , Derio,) I I. Coluzza (CICA–Centro Interdisciplinar de Química e Bioloxía, Departamento de Química, Facultade de Ciencias, Campus de Elviña, Universidade da Coruña 7 , 15071 A Coruña,)

Abstract

CD81 is a human receptor that clusters into microdomains to mediate cell signaling processes. Previous structural studies on the CD81 large-extracellular-loop domain (CD81LEL) proposed that its conformation (ranging from closed to open) may depend on environmental pH conditions. However, the precise mechanism governing CD81LEL plasticity has remained unconfirmed until now. Here, by combining molecular dynamics simulations and spectroscopic experiments on CD81LEL, we show that the mechanism underlying the dependence of the changes in pH to the opening of CD81LEL relates to the modulation of the solvation shell by “antenna” residues. The antenna residues are D139 and E188. Under acidic conditions, such residues generate a signal cascade propagating through the CD81LEL molecule changing the local solvation that, in turn, acts as an effector of the closed-to-open conformational transition. We further proved the key role of D139 and E188 by introducing mutations that switch off their sensitivity to pH. As expected, the mutations stabilize the closed conformation. This signal transduction mechanism might play a role in other cellular receptors that function along the endosomal pathway.

Article Details

Volume / Issue Vol. 162, Issue 15
Published April 21, 2025
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (5)

C

C. Risueño

Structure and Cell Biology of Viruses Lab, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA) 1 , Derio,

I

I. Carbajo

Materials Physics Center (CFM-MPC) 3 , Paseo Manuel de Lardizabal, 5-E-20018 Donostia-San Sebastián, Gipuzkoa,

D

D. Charro

Structure and Cell Biology of Viruses Lab, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA) 1 , Derio,

N

N. G. A. Abrescia

Structure and Cell Biology of Viruses Lab, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA) 1 , Derio,

I

I. Coluzza

CICA–Centro Interdisciplinar de Química e Bioloxía, Departamento de Química, Facultade de Ciencias, Campus de Elviña, Universidade da Coruña 7 , 15071 A Coruña,