Patulin and Xestoquinol are inhibitors of DNA topoisomerase 1

E Emanuela Tumini (Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla) R Ralf E. Wellinger (Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla) E Emilia Herrera-Moyano (Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla) P Patricia Navarro-Cansino (Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla) M María García-Rubio (Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla) D Daniel Salas-Lloret (Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla) A Alejandro Losada (Research and Development, Oncology Business Unit, PharmaMar Sociedad Anónima) M María J. Muñoz-Alonso (Research and Development, Oncology Business Unit, PharmaMar Sociedad Anónima) H Hélène Gaillard (Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla) R Rosa Luna (Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla) A Andrés Aguilera (Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla)

Abstract

DNA topoisomerase 1 (TOP1) is essential for transcription, replication, and repair. Its function relies on two catalytic steps, DNA breakage and rejoining. Inhibitors of the second step prevent DNA rejoining and lead to persistent DNA breaks, acting as topoisomerase poisons, used as anticancer drugs. However, reliable inhibitors of the first step are not available. Here, we provide genetic and molecular evidence supporting that Patulin and, to a lesser extent, Xestoquinol inhibit the first catalytic step of TOP1 in vitro, in yeast and in human cells. Particularly, Patulin prevents the accumulation of TOP1 cleavage complexes caused by the TOP1 poison camptothecin (CPT) in human cells. Moreover, Patulin pretreatment of human or yeast cells reduces DNA damage and the accumulation of DNA breaks upon CPT exposure. Consistent with the protective role of TOP1 against harmful R-loops, Patulin treatment increases R-loops and R-loop-associated cytotoxicity, mimicking the effect of TOP1 silencing. Altogether our findings indicate that Patulin and Xestoquinol are nonpoisoning inhibitors of TOP1, which should potentiate new research approaches in molecular biology and medicine.

Article Details

Volume / Issue Vol. 122, Issue 17
Published April 29, 2025
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (11)

E

Emanuela Tumini

Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla

R

Ralf E. Wellinger

Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla

E

Emilia Herrera-Moyano

Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla

P

Patricia Navarro-Cansino

Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla

M

María García-Rubio

Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla

D

Daniel Salas-Lloret

Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla

A

Alejandro Losada

Research and Development, Oncology Business Unit, PharmaMar Sociedad Anónima

M

María J. Muñoz-Alonso

Research and Development, Oncology Business Unit, PharmaMar Sociedad Anónima

H

Hélène Gaillard

Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla

R

Rosa Luna

Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla

A

Andrés Aguilera

Department of Genome Biology, Centro Andaluz de Biología Molecular y Medicina Regenerativa, Universidad de Sevilla