Molecular basis of ligand binding and receptor activation at the human A3 adenosine receptor

L Liudi Zhang J Jesse I. Mobbs F Felix M. Bennetts H Hariprasad Venugopal (Ramaciotti Centre for Cryo Electron Microscopy, Monash University) A Anh T. N. Nguyen (Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University) A Arthur Christopoulos (Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University) D Daan van der Es L Laura H. Heitman (Leiden Academic Centre for Drug Research) L Lauren T. May (Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University) A Alisa Glukhova D David M. Thal

Abstract

Abstract Adenosine receptors (ARs: A 1 AR, A 2A AR, A 2B AR, and A 3 AR) are crucial therapeutic targets; however, developing selective, efficacious drugs for them remains a significant challenge. Here, we present high-resolution cryo-electron microscopy (cryo-EM) structures of the human A 3 AR in three distinct functional states: bound to the endogenous agonist adenosine, the clinically relevant agonist Piclidenoson, and the covalent antagonist LUF7602. These structures, complemented by mutagenesis and pharmacological studies, reveal an A 3 AR activation mechanism that involves an extensive hydrogen bond network from the extracellular surface down to the orthosteric binding site. In addition, we identify a cryptic pocket that accommodates the N 6 -iodobenzyl group of Piclidenoson through a ligand-dependent conformational change of M174 5.35 . Our comprehensive structural and functional characterisation of A 3 AR advances our understanding of adenosine receptor pharmacology and establishes a foundation for developing more selective therapeutics for various disorders, including inflammatory diseases, cancer, and glaucoma.

Article Details

Volume / Issue Vol. 16, Issue 1
Published August 18, 2025
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (11)

L

Liudi Zhang

J

Jesse I. Mobbs

F

Felix M. Bennetts

H

Hariprasad Venugopal

Ramaciotti Centre for Cryo Electron Microscopy, Monash University

A

Anh T. N. Nguyen

Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University

A

Arthur Christopoulos

Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University

D

Daan van der Es

L

Laura H. Heitman

Leiden Academic Centre for Drug Research

L

Lauren T. May

Drug Discovery Biology Theme, Monash Institute of Pharmaceutical Sciences, Monash University

A

Alisa Glukhova

D

David M. Thal