Methylation-controlled photophysical tuning in isolated acridine cations revealed by cryogenic fluorescence spectroscopy and TD-DFT

F Franco Leonardo Molina (Department of Physics and Astronomy, Aarhus University 1 , Aarhus,) K Kaja Bangsgaard Johansen (Department of Chemistry, Aarhus University 2 , Aarhus,) I Iden Djavani-Tabrizi (Department of Physics and Astronomy, Aarhus University 1 , Aarhus,) T Thomas Toft Lindkvist (Department of Physics and Astronomy, Aarhus University 1 , Aarhus,) S Steen Brøndsted Nielsen (Department of Physics and Astronomy, Aarhus University 1 , Aarhus,)

Abstract

Acridine derivatives, such as proflavine, acriflavine, and acridine orange, have been used extensively in biology and biomedicine as fluorescent probes by forming DNA-intercalating complexes. This approach benefits from a comprehensive understanding of their photophysical properties. In this context, we studied the fluorescence properties of proflavine, a reference compound, and its methylated derivatives under cryogenic, isolated conditions. Fluorescence excitation and dispersed emission spectra were measured, and spectral interpretation was supported by time-dependent density functional theory (TD-DFT) calculations at the ωB97XD/aug-cc-pVDZ level of theory. The excitation and emission spectra exhibit progressively red-shifted maxima with increasing methylation, reaching shifts up to 0.270 eV in emission, while the vibronic structure evolves from sharp to broad depending on the methylation site. Molecular geometry optimization, in both ground and excited states, predicts that the methylation of the amino side groups maintains the planar geometry observed in proflavine. In contrast, methylation of the nitrogen heterocycle disrupts symmetry, leading to an out-of-plane bend. These geometric differences lead to distinct active vibronic modes in Franck–Condon simulations, providing an explanation for the observed spectral differences. Additionally, TD-DFT calculations reproduce the red-shift trend experimentally observed, although they systematically overestimate excitation energies. Overall, the findings establish methylation as an effective strategy for tuning the photophysics of diaminoacridines, demonstrating that side substitution enables controlled spectral shifts without compromising emission efficiency or spectral resolution. These insights provide a rational framework for designing functional dyes with tailored optical properties for biological applications.

Article Details

Volume / Issue Vol. 165, Issue 5
Published August 07, 2026
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (5)

F

Franco Leonardo Molina

Department of Physics and Astronomy, Aarhus University 1 , Aarhus,

K

Kaja Bangsgaard Johansen

Department of Chemistry, Aarhus University 2 , Aarhus,

I

Iden Djavani-Tabrizi

Department of Physics and Astronomy, Aarhus University 1 , Aarhus,

T

Thomas Toft Lindkvist

Department of Physics and Astronomy, Aarhus University 1 , Aarhus,

S

Steen Brøndsted Nielsen

Department of Physics and Astronomy, Aarhus University 1 , Aarhus,