Marcus cross relation in the space of H-atom abstraction reactions boosted through off-diagonal thermodynamics

J Jan Kovář (J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences 1 , Dolejškova 3, 18223 Prague,) E Erik Andris (Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences 3 , Flemingovo nám. 2, 16610 Prague,) Z Zuzanna Wojdyla (J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences 1 , Dolejškova 3, 18223 Prague,) J Jishnu Sai Gopinath (J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, Prague 18223, Czech Republic) J Jakub Klinkovský (Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague 2 , Trojanova 13, 12000 Praha 2,) R Radek Fučík (Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague 2 , Trojanova 13, 12000 Praha 2,) M Martin Srnec (J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, Prague 18223, Czech Republic)

Abstract

Proton-coupled electron transfer (PCET) and hydrogen-atom transfer (HAT) reactions, collectively called H-atom abstraction (HAA) reactions, play critical roles in biological processes and modern organic synthesis. The kinetics of these processes can align with the principles described in the renowned Marcus cross relation (MCR), a framework initially formulated to describe electron transfer mechanisms. The MCR provides an outstanding link between the kinetics of HAA reactions involving two distinct reactants and two related auxiliary self-exchange reactions—each between a molecule of one of the reactants and its conjugated radical. In this study, we investigate the applicability and limitations of the canonical MCR across over 300 HAA reactions, providing a comprehensive theoretical analysis. Our findings reveal the need for an enhanced framework that incorporates “off-diagonal” thermodynamic factors—asynchronicity and frustration. Of these factors, asynchronicity, which quantifies the imbalance between the proton vs electron transfer components of the reaction, is identified as the dominant contributor to the improved predictive accuracy of the MCR. Notably, the incorporation of off-diagonal thermodynamics yields a more pronounced enhancement for HAT reactions than for PCET-like HAA reactions. As a corollary, the model also describes a so-called pseudoinverted region, in which more exergonic reactions feature higher free energy barriers even though the thermodynamic driving force is not so large as it is required for the proper inverted region well-known from the original Marcus theory. This advancement offers a refined theoretical basis for understanding H-atom abstraction mechanisms and underscores the importance of off-diagonal effects in HAA chemistry.

Article Details

Volume / Issue Vol. 163, Issue 14
Published October 14, 2025
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (7)

J

Jan Kovář

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences 1 , Dolejškova 3, 18223 Prague,

E

Erik Andris

Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences 3 , Flemingovo nám. 2, 16610 Prague,

Z

Zuzanna Wojdyla

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences 1 , Dolejškova 3, 18223 Prague,

J

Jishnu Sai Gopinath

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, Prague 18223, Czech Republic

J

Jakub Klinkovský

Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague 2 , Trojanova 13, 12000 Praha 2,

R

Radek Fučík

Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague 2 , Trojanova 13, 12000 Praha 2,

M

Martin Srnec

J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, Prague 18223, Czech Republic