Malware detection using pre-trained transformer encoder with byte sequences

E Eun-jin Kim Y Yun-Kyung Lee (Division of Life Sciences, Department of Cell Biology and Neuroscience, School of Arts and Sciences, Rutgers, The State University of New Jersey) S Sang-Min Lee J Jeong-Nyeo Kim A Ah Reum Kang M Mi-seo Kim Y Young-Seob Jeong

Abstract

Ordinary users encounter various documents on the network every day, such as news articles, emails, and messages, and most are vulnerable to malicious attacks. Malicious attack methods continue to evolve, making neural network-based malware detection increasingly appealing to both academia and industry. Recent studies have leveraged byte sequences within files to detect malicious activities, primarily using convolutional neural networks to capture local patterns in the byte sequences. Meanwhile, in natural language processing, Transformer-based language models have demonstrated superior performance across various tasks and have been applied to other domains, such as image analysis and speech recognition. In this paper, we introduce a novel Transformer-based language model for malware detection that processes byte sequences as input. We propose two new pre-training strategies: real-or-fake prediction and same-sequence prediction. Including conventional pre-training strategies such as masked language modeling and next-sentence prediction, we explore all possible combinations of these approaches. By compiling existing byte sequences for malware detection, we construct a benchmark consisting of three file types (PDF, HWP, and MS Office) for pre-training and fine-tuning. Our empirical results demonstrate that our language model outperforms convolutional neural networks in the malware detection task, achieving a macro F1 score improvement of approximately 2.7%p∼11.1%p. We believe our language model will serve as a foundation model for malware detection services, and will extend our research to develop a more powerful encoder-based model that can process longer byte sequences.

Article Details

Journal PLoS ONE
Volume / Issue Vol. 20, Issue 10
Published October 13, 2025
Pages e0332307
ISSN 1932-6203
Publisher Public Library of Science

Journal Info

PLoS ONE

Public Library of Science

ISSN: 1932-6203 Open Access Health Sciences

Authors (7)

E

Eun-jin Kim

Y

Yun-Kyung Lee

Division of Life Sciences, Department of Cell Biology and Neuroscience, School of Arts and Sciences, Rutgers, The State University of New Jersey

S

Sang-Min Lee

J

Jeong-Nyeo Kim

A

Ah Reum Kang

M

Mi-seo Kim

Y

Young-Seob Jeong