Lipidomic profiling identifies key pathways and a 5-lipid panel with high diagnostic efficacy for ischemic stroke

J Junhua Lu Y Yuan Liu Z Zhaoran Guan Y Yue Wu (Genomic Analysis Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.) Y Ying Zhao (Division of Biobased Chemicals) Y Ying Lin (Induced Proximity Platform, Amgen Research) L Liqiu Ma P Ping Xue H Hongjun Guan

Abstract

Abstract Ischemic stroke (IS) accounts for over 80% of all stroke cases, presenting as a prevalent, debilitating cerebrovascular disorder with limited therapeutic options. The urgent need for early diagnostic biomarkers and insights into pathogenesis has highlighted dysregulated lipid metabolism as a key contributor, while metabolomics advances enable novel biomarker exploration. This study integrated bioinformatics and a case-control design to investigate IS-related lipid metabolism pathways and blood lipid biomarkers. Gene Expression Omnibus (GEO) gene expression datasets were analyzed via Gene Set Enrichment Analysis (GSEA) to identify lipid pathways, and case-control analyses employed Chi-square/Z tests for conventional blood lipids, Liquid Chromatography-Mass Spectrometry (LC-MS) for plasma small-molecule lipids, and orthogonal partial least squares discriminant analysis, t-tests, and Receiver Operating Characteristic (ROC) curves for validation. Results revealed five significantly downregulated lipid pathways (α-linolenic acid, linolenic acid, ether lipid, glycerophospholipid, and sphingolipid metabolism). IS patients exhibited dyslipidemia (elevated TC/TG/LDL-C, reduced HDL-C). Additionally, 15 differentially expressed lipid molecules were identified in a validation cohort after excluding the influence of comorbidities. Among these, five representative lipids (e.g., PE(P-18:1/22:4)) demonstrated potential diagnostic performance, with an area under the receiver operating characteristic curve (AUC) of 0.917, sensitivity of 60.0%, and specificity of 96.7%, indicating their potential utility as biomarkers for the early detection of IS.

Article Details

Volume / Issue Vol. 16, Issue 1
Published March 05, 2026
ISSN 2045-2322
Publisher Nature Portfolio

Journal Info

Scientific Reports

Nature Portfolio

ISSN: 2045-2322 Open Access Life Sciences

Authors (9)

J

Junhua Lu

Y

Yuan Liu

Z

Zhaoran Guan

Y

Yue Wu

Genomic Analysis Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.

Y

Ying Zhao

Division of Biobased Chemicals

Y

Ying Lin

Induced Proximity Platform, Amgen Research

L

Liqiu Ma

P

Ping Xue

H

Hongjun Guan