Light controls gene functions through alternative splicing in fungi

Y Yifan Li H Huanhong Lu (Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University) D Degang Guo (Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University) X Xiaoyan Li F Fei Qi J Jian Zhang R Reinhard Fischer (Department of Microbiology, Institute for Applied Biosciences, Karlsruhe Institute of Technology-South Campus) Q Qirong Shen (Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University) Z Zhenzhong Yu (Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University)

Abstract

Light controls important biological processes in fungi by regulating transcriptional gene activation. Here, we found that beyond the regulation of mRNA transcript abundance, light regulates alternative splicing (AS) in the filamentous fungi Aspergillus nidulans , Trichoderma guizhouense, and Neurospora crassa . Blue light-regulated AS was involved in ergothioneine biosynthesis and conidiation in T. guizhouense , which required the blue light receptor BLR1. Blue light activated the MAPK HOG (Sak) pathway which then transmitted the signal via the serine/threonine kinase SRK1 to the AS key regulator SRP1. SRK1 and SRP1 are important for light-induced conidiation. The light-activated HOG pathway led to an increase of the SRK1 protein level and its phosphorylation status. Phosphorylated SRK1 translocated from the cytoplasm to the nucleus to interact with SRP1, thereby regulating AS efficiency. This study unravels another level of complexity of fungal environmental sensing and responses and also first describes the entire cascade from an environmental signal to the splicing machinery.

Article Details

Volume / Issue Vol. 122, Issue 26
Published July 01, 2025
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (9)

Y

Yifan Li

H

Huanhong Lu

Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University

D

Degang Guo

Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University

X

Xiaoyan Li

F

Fei Qi

J

Jian Zhang

R

Reinhard Fischer

Department of Microbiology, Institute for Applied Biosciences, Karlsruhe Institute of Technology-South Campus

Q

Qirong Shen

Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University

Z

Zhenzhong Yu

Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Educational Ministry Engineering Center of Resource-saving fertilizers, Department of Plant Nutrition and Fertilizer Science, College of Resources and Environmental Sciences, Nanjing Agricultural University