Laboratory-based cellular-level correlative visible-light and X-ray microscopy for 3D evaluation of mouse kidney biopsy

N Naoki Kunishima R Raita Hirose Y Yoshihiro Takeda K Koichiro Ito K Kengo Furuichi K Kazuhiko Omote

Abstract

Abstract X-ray microscopy (XRM) is an emerging technology for nondestructive evaluation of bio-specimen. We previously reported that paraffin, which is used for normal histology, acts as a tissue contrast enhancement agent in XRM, thereby enabling cellular-level 3D visualization of unstained biological samples. In this work, a new form of correlative visible-light and X-ray microscopy (CLXM) was introduced, where a kidney biopsy sample was first observed by laboratory-based XRM with paraffin-mediated contrast enhancement, and the same sample was then observed by visible-light microscopy (LM) at the same measurement point, to compare images from these two modalities precisely. This laboratory-based cellular-level CLXM was applied to a kidney biopsy from a 5/6 nephrectomy model mouse to evaluate glomerular hypercellularity lesions. The image comparison identified high-opacity particles in XRM images as cell nuclei in various parts of the nephron including glomeruli and tubules. A complementary approach using both LM and XRM images allowed us to identify/segment three lesions as aggregations of mesangial cells. It was found that one mesangial cell occupied a volume of about 100 μm 3 in these lesions showing different 3D morphology. Present results suggest the availability of laboratory-based XRM for the practical 3D evaluation of whole kidney biopsies at cellular-level spatial resolution.

Article Details

Volume / Issue Vol. 16, Issue 1
Published April 02, 2026
ISSN 2045-2322
Publisher Nature Portfolio

Journal Info

Scientific Reports

Nature Portfolio

ISSN: 2045-2322 Open Access Life Sciences

Authors (6)

N

Naoki Kunishima

R

Raita Hirose

Y

Yoshihiro Takeda

K

Koichiro Ito

K

Kengo Furuichi

K

Kazuhiko Omote