<i>Sinorhizobium meliloti</i> FcrX coordinates cell cycle and division during free-living growth and symbiosis by a ClpXP-dependent mechanism

S Sara Dendene (Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay) S Shuanghong Xue (CNRS, Laboratoire de Chimie Bactérienne, Institut de Microbiologie de la Méditerranée, Turing Center for Living Systems, Aix-Marseille Université) R Roza Mohammedi (Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay) A Adam Vieillard (Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay) Q Quentin Nicoud (Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay) O Odile Valette (CNRS, Laboratoire de Chimie Bactérienne, Institut de Microbiologie de la Méditerranée, Turing Center for Living Systems, Aix-Marseille Université) A Angela Frascella (CNRS, Laboratoire de Chimie Bactérienne, Institut de Microbiologie de la Méditerranée, Turing Center for Living Systems, Aix-Marseille Université) A Anna Bonnardel (CNRS, Laboratoire de Chimie Bactérienne, Institut de Microbiologie de la Méditerranée, Turing Center for Living Systems, Aix-Marseille Université) R Romain Le Bars (Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay) M Mickaël Bourge (Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay) P Peter Mergaert (Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay) M Matteo Brilli (Department of Biosciences, University of Milan) B Benoît Alunni (Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay) E Emanuele G. Biondi (Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay)

Abstract

Sinorhizobium meliloti is a soil bacterium that establishes a nitrogen-fixing symbiosis within root nodules of legumes. In this symbiosis, S. meliloti undergoes a drastic cellular change leading to a terminally differentiated form, called bacteroid, characterized by genome endoreduplication, increased cell size, and high membrane permeability. Bacterial cell cycle (mis)regulation is at the heart of this differentiation process. In free-living cells, the master regulator CtrA ensures the progression of cell cycle by activating cell division (controlled by FtsZ) and inhibiting DNA replication, while on the other hand the so far poorly unknown downregulation of CtrA and FtsZ is essential for bacteroid differentiation. Here, we combine cell biology, biochemistry, and bacterial genetics to understand the functions of FcrX, a factor that controls both CtrA and FtsZ in free-living growth and in symbiosis. Depletion of the essential gene fcrX led to abnormally high levels of FtsZ and CtrA and minicell formation. Using multiple complementary techniques, we showed that FcrX may interact with FtsZ and CtrA. Moreover, fcrX transcription is directly controlled by CtrA itself and the FcrX protein displays a cell cycle-dependent pattern. We showed further that FcrX also binds the degradosome complex ClpXP and its adaptors CpdR1 and RcdA, and that CtrA degradation efficiency depends on FcrX. We further showed that, despite weak homology with FliJ-like proteins, only FcrX proteins from closely related species are able to complement S. meliloti fcrX function. Finally, deregulation of FcrX showed abnormal symbiotic behaviors in plants suggesting a putative role of this factor during bacteroid differentiation.

Article Details

Volume / Issue Vol. 122, Issue 11
Published March 18, 2025
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (14)

S

Sara Dendene

Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay

S

Shuanghong Xue

CNRS, Laboratoire de Chimie Bactérienne, Institut de Microbiologie de la Méditerranée, Turing Center for Living Systems, Aix-Marseille Université

R

Roza Mohammedi

Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay

A

Adam Vieillard

Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay

Q

Quentin Nicoud

Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay

O

Odile Valette

CNRS, Laboratoire de Chimie Bactérienne, Institut de Microbiologie de la Méditerranée, Turing Center for Living Systems, Aix-Marseille Université

A

Angela Frascella

CNRS, Laboratoire de Chimie Bactérienne, Institut de Microbiologie de la Méditerranée, Turing Center for Living Systems, Aix-Marseille Université

A

Anna Bonnardel

CNRS, Laboratoire de Chimie Bactérienne, Institut de Microbiologie de la Méditerranée, Turing Center for Living Systems, Aix-Marseille Université

R

Romain Le Bars

Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay

M

Mickaël Bourge

Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay

P

Peter Mergaert

Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay

M

Matteo Brilli

Department of Biosciences, University of Milan

B

Benoît Alunni

Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay

E

Emanuele G. Biondi

Commissariat à l’énergie atomique et aux énergies alternatives, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay