Improving micromorphological analysis with CNN-based segmentation of flint/obsidian, bone and charcoal

R Rafael Arnay P Pedro García-Villa J Javier Hernández-Aceituno S Sara Rueda-Saiz C Carolina Mallol (Instituto Universitario de Bio-Orgánica Antonio González, Universidad de La Laguna)

Abstract

The quantification and identification of components in archaeological micromorphology remain subjective and challenging, particularly for early-career researchers. To address this, we developed a deep learning tool for the automatic segmentation of three materials commonly found in Palaeolithic contexts and thin sections: bone, charcoal, and lithic fine-grained debitage (flint and obsidian). Using high-resolution photomicrographs of 57 thin sections in plane-polarised and cross-polarised light, we trained and evaluated state-of-the-art convolutional neural networks (CNNs) for material segmentation. The best-performing configuration, a U-Net with an InceptionV4 encoder, achieved mean intersection over union (IoU) scores of 0.96 for flint/obsidian, 0.80 for bone, and 0.82 for charcoal. The models also classified the relative abundance of each material with balanced accuracies of 0.99 for flint/obsidian, 0.92 for bone, and 0.85 for charcoal. These results demonstrate the potential of deep learning to enhance objectivity, accuracy, and reproducibility in archaeological micromorphology, providing a valuable resource for future geoarchaeological research.

Article Details

Journal PLoS ONE
Volume / Issue Vol. 21, Issue 1
Published January 20, 2026
Pages e0340353
ISSN 1932-6203
Publisher Public Library of Science

Journal Info

PLoS ONE

Public Library of Science

ISSN: 1932-6203 Open Access Health Sciences

Authors (5)

R

Rafael Arnay

P

Pedro García-Villa

J

Javier Hernández-Aceituno

S

Sara Rueda-Saiz

C

Carolina Mallol

Instituto Universitario de Bio-Orgánica Antonio González, Universidad de La Laguna