How local is “local”? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons

Y Yair Davidson (Department of Computer Science, Technion—Israel Institute of Technology 1 , Haifa 32000,) A Aviad Philipp (Department of Computer Science, Technion—Israel Institute of Technology 1 , Haifa 32000,) S Sabyasachi Chakraborty (Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion—Israel Institute of Technology 2 , Haifa 32000,) A Alex M. Bronstein (Department of Computer Science, Technion—Israel Institute of Technology 1 , Haifa 32000,) R Renana Gershoni-Poranne (Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion—Israel Institute of Technology 2 , Haifa 32000,)

Abstract

We investigate the locality of magnetic response in polycyclic aromatic molecules using a novel deep-learning approach. Our method employs graph neural networks (GNNs) with a graph-of-rings representation to predict nucleus independent chemical shifts (NICS) in the space around the molecule. We train a series of models, each time reducing the size of the largest molecules used in training. The accuracy of prediction remains high (MAE < 0.5 ppm), even when training the model only on molecules with up to four rings, thus providing strong evidence for the locality of magnetic response. To overcome the known problem of generalization of GNNs, we implement a k-hop expansion strategy and succeed in achieving accurate predictions for molecules with up to 15 rings (almost 4 times the size of the largest training example). Our findings have implications for understanding the magnetic response in complex molecules and demonstrate a promising approach to overcoming GNN scalability limitations. Furthermore, the trained models enable rapid characterization, without the need for more expensive DFT calculations.

Article Details

Volume / Issue Vol. 162, Issue 14
Published April 14, 2025
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (5)

Y

Yair Davidson

Department of Computer Science, Technion—Israel Institute of Technology 1 , Haifa 32000,

A

Aviad Philipp

Department of Computer Science, Technion—Israel Institute of Technology 1 , Haifa 32000,

S

Sabyasachi Chakraborty

Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion—Israel Institute of Technology 2 , Haifa 32000,

A

Alex M. Bronstein

Department of Computer Science, Technion—Israel Institute of Technology 1 , Haifa 32000,

R

Renana Gershoni-Poranne

Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion—Israel Institute of Technology 2 , Haifa 32000,