How local is “local”? Deep learning reveals locality of the induced magnetic field of polycyclic aromatic hydrocarbons
Abstract
We investigate the locality of magnetic response in polycyclic aromatic molecules using a novel deep-learning approach. Our method employs graph neural networks (GNNs) with a graph-of-rings representation to predict nucleus independent chemical shifts (NICS) in the space around the molecule. We train a series of models, each time reducing the size of the largest molecules used in training. The accuracy of prediction remains high (MAE < 0.5 ppm), even when training the model only on molecules with up to four rings, thus providing strong evidence for the locality of magnetic response. To overcome the known problem of generalization of GNNs, we implement a k-hop expansion strategy and succeed in achieving accurate predictions for molecules with up to 15 rings (almost 4 times the size of the largest training example). Our findings have implications for understanding the magnetic response in complex molecules and demonstrate a promising approach to overcoming GNN scalability limitations. Furthermore, the trained models enable rapid characterization, without the need for more expensive DFT calculations.
Article Details
Journal Info
The Journal of Chemical Physics
American Institute of Physics
Authors (5)
Yair Davidson
Department of Computer Science, Technion—Israel Institute of Technology 1 , Haifa 32000,
Aviad Philipp
Department of Computer Science, Technion—Israel Institute of Technology 1 , Haifa 32000,
Sabyasachi Chakraborty
Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion—Israel Institute of Technology 2 , Haifa 32000,
Alex M. Bronstein
Department of Computer Science, Technion—Israel Institute of Technology 1 , Haifa 32000,
Renana Gershoni-Poranne
Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion—Israel Institute of Technology 2 , Haifa 32000,