Highly parallel optimisation of chemical reactions through automation and machine intelligence

J Joshua W. Sin S Siu Lun Chau R Ryan P. Burwood K Kurt Püntener (Pharmaceutical Division, Synthetic Molecules Technical Development, Process Chemistry and Catalysis) R Raphael Bigler P Philippe Schwaller

Abstract

Abstract We report the development and application of a scalable machine learning (ML) framework (Minerva) for highly parallel multi-objective reaction optimisation with automated high-throughput experimentation (HTE). Minerva demonstrates robust performance with experimental data-derived benchmarks, efficiently handling large parallel batches, high-dimensional search spaces, reaction noise, and batch constraints present in real-world laboratories. Validating our approach experimentally, we apply Minerva in a 96-well HTE reaction optimisation campaign for a nickel-catalysed Suzuki reaction, tackling challenges in non-precious metal catalysis. Our approach effectively navigates the complex reaction landscape with unexpected chemical reactivity, outperforming traditional experimentalist-driven methods. Extending to industrial applications, we deploy Minerva in pharmaceutical process development, successfully optimising two active pharmaceutical ingredient (API) syntheses. For both a Ni-catalysed Suzuki coupling and a Pd-catalysed Buchwald-Hartwig reaction, our approach identifies multiple conditions achieving >95 area percent (AP) yield and selectivity, directly translating to improved process conditions at scale.

Article Details

Volume / Issue Vol. 16, Issue 1
Published July 12, 2025
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (6)

J

Joshua W. Sin

S

Siu Lun Chau

R

Ryan P. Burwood

K

Kurt Püntener

Pharmaceutical Division, Synthetic Molecules Technical Development, Process Chemistry and Catalysis

R

Raphael Bigler

P

Philippe Schwaller