Graph neural network-based structural classification of glass-forming liquids and its interpretation via self-attention mechanism

K Kohei Yoshikawa K Kentaro Yano (Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka , Toyonaka, Osaka 560-8531,) S Shota Goto (Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka , Toyonaka, Osaka 560-8531,) K Kang Kim (Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka , Toyonaka, Osaka 560-8531,) N Nobuyuki Matubayasi (Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka , Toyonaka, Osaka 560-8531,)

Abstract

Glass-forming liquids exhibit slow dynamics below their melting temperatures, maintaining an amorphous structure reminiscent of normal liquids. Distinguishing microscopic structures in the supercooled and high-temperature regimes remains a debated topic. Building on recent advances in machine learning, particularly Graph Neural Networks (GNNs), our study automatically extracts features, unveiling fundamental mechanisms driving structural changes at varying temperatures. We employ the self-attention mechanism to generate attention coefficients that quantify the importance of connections between graph nodes, providing insights into the rationale behind GNN predictions. By exploring structural changes with decreasing temperature through the GNN + self-attention using physically defined structural descriptors, including the bond-orientational order parameter, Voronoi cell volume, and coordination number, we identify strong correlations between high attention coefficients and more disordered structures as a key indicator of variations in glass-forming liquids.

Article Details

Volume / Issue Vol. 163, Issue 2
Published July 14, 2025
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (5)

K

Kohei Yoshikawa

K

Kentaro Yano

Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka , Toyonaka, Osaka 560-8531,

S

Shota Goto

Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka , Toyonaka, Osaka 560-8531,

K

Kang Kim

Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka , Toyonaka, Osaka 560-8531,

N

Nobuyuki Matubayasi

Division of Chemical Engineering, Department of Materials Engineering Science, Graduate School of Engineering Science, The University of Osaka , Toyonaka, Osaka 560-8531,