GenSym: A tool for random symmetric structure generation and its application in crystal structure prediction software

Y Yu Han C Chi Ding (Department of Physics, Nanjing University) S Shaobo Yu Z Zhennan Zhang (National Laboratory of Solid State Microstructures, School of Physics and Collaborative Innovation Center of Advanced Microstructures, Nanjing University 1 , Nanjing 210093,) J Junjie Wang (State Key Laboratory of Quantum Functional Materials, School of Physical Science and Technology) Q Qiuhan Jia H Hao Gao (Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy/State Key Laboratory of Bioactive Molecules and Druggability Assessment/International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development of Chinese Ministry of Education of China/Guangdong Province Key Laboratory of Pharmacodynamic Constituents of TCM and New Drugs Research) J Jian Sun

Abstract

Crystal structure prediction (CSP) methods have become essential tools in materials discovery. As the initial step in CSP, the quality of the generated structures critically determines efficiency. It has been increasingly recognized that incorporating symmetry during structure generation can significantly enhance efficiency, as most real materials crystallize in non-P1 symmetries. In this work, we present an open-source package for random symmetric structure generation under user-defined constraints. The program supports bulk, low-dimensional, and molecular crystal generation, with flexible control over parameters such as cell shape, bond length, conventional or primitive symmetry settings, Wyckoff position weighting, and density uniformity adjustment. Furthermore, it interfaces with prototype databases, enabling structure generation based on known prototypes. We demonstrate that its integration with CSP frameworks substantially improves search efficiency, offering strong potential for accelerating novel materials design and discovery.

Article Details

Volume / Issue Vol. 164, Issue 12
Published March 28, 2026
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (8)

Y

Yu Han

C

Chi Ding

Department of Physics, Nanjing University

S

Shaobo Yu

Z

Zhennan Zhang

National Laboratory of Solid State Microstructures, School of Physics and Collaborative Innovation Center of Advanced Microstructures, Nanjing University 1 , Nanjing 210093,

J

Junjie Wang

State Key Laboratory of Quantum Functional Materials, School of Physical Science and Technology

Q

Qiuhan Jia

H

Hao Gao

Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy/State Key Laboratory of Bioactive Molecules and Druggability Assessment/International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development of Chinese Ministry of Education of China/Guangdong Province Key Laboratory of Pharmacodynamic Constituents of TCM and New Drugs Research

J

Jian Sun