From database to prediction: Machine learning for 5-f elements coordination using actinide x-ray experimental spectra (AXES) collection

E E. Gerber (Institute for Artificial Intelligence, Lomonosov Moscow State University 1 , Moscow 119192,) P P. Zasimov (Department of Chemistry, Lomonosov Moscow State University 3 , 119991 Moscow,) A A. Mitrofanov (Institute for Artificial Intelligence, Lomonosov Moscow State University 1 , Moscow 119192,) S S. Kalmykov (Department of Chemistry, Lomonosov Moscow State University 3 , 119991 Moscow,)

Abstract

The Actinide X-ray Experimental Spectra (AXES) database has been presented as a comprehensive database of x-ray absorption spectroscopy (XAS) spectra. It is the largest database of experimental spectra of actinides with a diverse range of measurement techniques (standard resolution x-ray absorption near edge structure and high energy resolution fluorescence detected XAS), absorption edges (L3, M4, M5, and less common edges), and absorber types (Th, U, Np, Pu, and Am). The spectra have been aligned and normalized to facilitate further analysis, while the original unprocessed data have been retained for reference. Coordination information derived from the spectra and their corresponding structures has been integrated into a convolutional neural network to construct a structural property model capable of predicting the presence or absence of uranium atoms in various coordination environments. The model’s predictive accuracy and reliability can be further enhanced by expanding the AXES database or employing transfer learning techniques. In this study, the model has been pre-trained using Fe K-edge XAS spectra. In addition, key spectral regions critical for coordination number prediction have been identified using the Shapley Additive Explanations (SHAP) approach. The SHAP-value distribution indicates that spectral features associated with six-coordination uranium primarily appear in the edge and post-edge regions, while those linked to eight-coordination uranium predominantly influence only the edge shape. This analysis underscores the model's potential for advancing actinide coordination studies.

Article Details

Volume / Issue Vol. 163, Issue 23
Published December 21, 2025
ISSN 0021-9606
Publisher American Institute of Physics

Journal Info

The Journal of Chemical Physics

American Institute of Physics

ISSN: 0021-9606 Physical Sciences

Authors (4)

E

E. Gerber

Institute for Artificial Intelligence, Lomonosov Moscow State University 1 , Moscow 119192,

P

P. Zasimov

Department of Chemistry, Lomonosov Moscow State University 3 , 119991 Moscow,

A

A. Mitrofanov

Institute for Artificial Intelligence, Lomonosov Moscow State University 1 , Moscow 119192,

S

S. Kalmykov

Department of Chemistry, Lomonosov Moscow State University 3 , 119991 Moscow,