DNA bending mediated by ORC is essential for replication licensing in budding yeast

W Wai Hei Lam (Division of Life Science, The Hong Kong University of Science and Technology) D Daqi Yu (Division of Life Science, The Hong Kong University of Science and Technology) Q Qiongdan Zhang Y Yuhan Lin (School of Biological Sciences, The University of Hong Kong) N Ningning Li J Jian Li Y Yue Wu (Genomic Analysis Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.) Y Yingyi Zhang N Ning Gao (Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences) B Bik Kwoon Tye (Department of Molecular Biology and Genetics, Cornell University) Y Yuanliang Zhai (Division of Life Science, The Hong Kong University of Science and Technology) S Shangyu Dang (Division of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay)

Abstract

In eukaryotes, the origin recognition complex (ORC) promotes the assembly of minichromosome maintenance 2 to 7 complexes into a head-to-head double hexamer at origin DNA in a process known as replication licensing. In this study, we present a series of cryoelectron microscopy structures of yeast ORC mutants in complex with origin DNA. We show that Orc6, the smallest subunit of ORC, utilizes its transcription factor II B-B domain to orchestrate the sequential binding of ORC to origin DNA. In addition, Orc6 plays the role of a scaffold by stabilizing the basic patch (BP) of Orc5 for ORC to capture and bend origin DNA. Importantly, disrupting DNA bending through mutating three key residues in Orc5-BP impairs ORC’s ability to promote replication initiation at two points during the pre-RC assembly process. This study dissects the multifaceted role of Orc6 in orchestrating ORC’s activities on DNA and underscores the vital role of DNA bending by ORC in replication licensing.

Article Details

Volume / Issue Vol. 122, Issue 14
Published April 08, 2025
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (12)

W

Wai Hei Lam

Division of Life Science, The Hong Kong University of Science and Technology

D

Daqi Yu

Division of Life Science, The Hong Kong University of Science and Technology

Q

Qiongdan Zhang

Y

Yuhan Lin

School of Biological Sciences, The University of Hong Kong

N

Ningning Li

J

Jian Li

Y

Yue Wu

Genomic Analysis Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.

Y

Yingyi Zhang

N

Ning Gao

Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences

B

Bik Kwoon Tye

Department of Molecular Biology and Genetics, Cornell University

Y

Yuanliang Zhai

Division of Life Science, The Hong Kong University of Science and Technology

S

Shangyu Dang

Division of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay