Direct detection of an NH-π hydrogen bond in an intrinsically disordered peptide

L Luigi Russo D Dipendu Dhar R Robin Backer O Om Prakash F Fatima Matroodi K Kerstin Overkamp (Department of NMR-based Structural Biology) K Karin Giller (Department of NMR-based Structural Biology) S Stefan Becker (Department of NMR-based Structural Biology) C Christian Griesinger (Department of NMR-based Structural Biology) D Dieter Willbold B Barbara Rossi (Elettra Sincrotrone Trieste, Basovizza, Trieste 34149, Italy) M Mehdi D. Davari (Department of Bioorganic Chemistry) N Nasrollah Rezaei-Ghaleh

Abstract

Abstract Hydrogen bonds play crucial roles in functional biomolecular dynamics. It is suggested that non-conventional hydrogen bonds engaging π electrons are prevalent in proteins. The experimental support for their existence is however limited. Here, we provide direct NMR spectroscopic evidence for the existence of an NH-π interaction in an intrinsically disordered peptide (E22G-Aβ40). In particular, we demonstrate the correlation between the amide proton of a glycine residue (Gly22) and the aromatic carbons of its preceding Phe20 through π hydrogen bond-mediated scalar coupling between them, as predicted by density functional theory calculations. Our results present a proof-of-principle example of NH-π interactions in an intrinsically disordered protein (IDP) and suggest the potential prevalence of π hydrogen bonds on the surface of IDPs. Direct experimental verification of NH-π interactions in folded proteins remains for future studies.

Article Details

Volume / Issue Vol. 16, Issue 1
Published November 20, 2025
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (13)

L

Luigi Russo

D

Dipendu Dhar

R

Robin Backer

O

Om Prakash

F

Fatima Matroodi

K

Kerstin Overkamp

Department of NMR-based Structural Biology

K

Karin Giller

Department of NMR-based Structural Biology

S

Stefan Becker

Department of NMR-based Structural Biology

C

Christian Griesinger

Department of NMR-based Structural Biology

D

Dieter Willbold

B

Barbara Rossi

Elettra Sincrotrone Trieste, Basovizza, Trieste 34149, Italy

M

Mehdi D. Davari

Department of Bioorganic Chemistry

N

Nasrollah Rezaei-Ghaleh