Digestion-resistant proteins support the healthy metabolite profiles associated with plant-based diets

J Jenna E. AbuSalim M Michael M. MacArthur (Lewis-Sigler Institute for Integrative Genomics, Princeton University) M Meera Gupta (Lewis-Sigler Institute for Integrative Genomics, Princeton University) A Asael Roichman C Craig J. Hunter F Felix C. Keber (Department of Molecular Biology, Princeton University) S Seema Chatterjee (Department of Molecular Biology, Princeton University) M Mahta Moussavi (Food Security Research Center, Prairie View A&M University) J Javad Barouei (Human Nutrition and Food, Prairie View A&M University) M Martin Wühr (Department of Molecular Biology, Princeton University) D Dinanath Sulakhe (Center for Research Informatics, Biological Sciences Division, University of Chicago) C Christopher J. Lehmann (Department of Medicine, Section of Infectious Disease and Global Health, University of Chicago Medicine) M Mohamed S. Donia J Joshua D. Rabinowitz

Abstract

Plant-based diets are associated with both positive health outcomes and a diverse gut microbiome. Such diets alter the microbiome’s metabolic outputs, including increasing phenylalanine-derived phenols associated with beneficial health outcomes (hippuric acid and 3-phenylpropionate), while decreasing tyrosine-derived phenols considered uremic toxins (phenol sulfate and p-cresol sulfate). The mechanisms linking plant eating to these phenol metabolites are not known. Plant-based foods are fiber and phytochemical rich. They also contain proteins that are resistant to host digestion and thus reach the gut microbiome. Here, we show that fiber and digestion-resistant protein work in concert to shift the phenol profile by altering gut microbiome nutrient supply. Through isotope-tracing studies, we reveal that host secreted proteins are a source for phenol sulfate and p-cresol sulfate, while digestion-resistant dietary protein is the source for hippuric acid and 3-phenylpropionate. Fiber decreases bacterial digestion of host secreted proteins (e.g., mucins) and thus suppresses tyrosine-derived phenol sulfate and p-cresol sulfate, whose levels correlate with the mucin-digesting bacterial family Oscillospiraceae. Digestion-resistant dietary protein increases bacterial access to phenylalanine and thereby boosts phenylalanine-derived hippuric acid and 3-phenylpropionate. Thus, digestion-resistant plant protein modulates microbiome metabolism and, together with fiber, supports healthy metabolite profiles associated with plant-based diets.

Article Details

Volume / Issue Vol. 123, Issue 32
Published August 11, 2026
ISSN 0027-8424
Publisher National Academy of Sciences

Authors (14)

J

Jenna E. AbuSalim

M

Michael M. MacArthur

Lewis-Sigler Institute for Integrative Genomics, Princeton University

M

Meera Gupta

Lewis-Sigler Institute for Integrative Genomics, Princeton University

A

Asael Roichman

C

Craig J. Hunter

F

Felix C. Keber

Department of Molecular Biology, Princeton University

S

Seema Chatterjee

Department of Molecular Biology, Princeton University

M

Mahta Moussavi

Food Security Research Center, Prairie View A&M University

J

Javad Barouei

Human Nutrition and Food, Prairie View A&M University

M

Martin Wühr

Department of Molecular Biology, Princeton University

D

Dinanath Sulakhe

Center for Research Informatics, Biological Sciences Division, University of Chicago

C

Christopher J. Lehmann

Department of Medicine, Section of Infectious Disease and Global Health, University of Chicago Medicine

M

Mohamed S. Donia

J

Joshua D. Rabinowitz