Control of Golgi- V-ATPase through Sac1-dependent co-regulation of PI(4)P and cholesterol

X Xin Zhou M Miesje M. van der Stoel S Shreyas Kaptan H Haoran Li (Zhejiang University , , 866 Yuhangtang Rd , ,) S Shiqian Li (Center for Artificial Intelligence Chips, Institute of Artificial Intelligence, Peking University, Beijing, China.) M Maarit Hölttä H Helena Vihinen E Eija Jokitalo C Christoph Thiele O Olli Pietiläinen S Shin Morioka (Department of Biochemical Pathophysiology, Medical Research Laboratory, Institute of Integrated Research, Institute of Science Tokyo) J Junko Sasaki (Department of Biochemical Pathophysiology, Medical Research Laboratory, Institute of Integrated Research, Institute of Science Tokyo) T Takehiko Sasaki (Department of Biochemical Pathophysiology, Medical Research Laboratory, Institute of Integrated Research, Institute of Science Tokyo) I Ilpo Vattulainen (Department of Physics, University of Helsinki) E Elina Ikonen

Abstract

Abstract Sac1 is a conserved phosphoinositide phosphatase, whose loss-of-function compromises cell and organism viability. Here, we employ acute auxin-inducible Sac1 degradation to identify its immediate downstream effectors in human cells. Most of Sac1 is degraded in ~1 h, paralleled by increased PI(4)P and decreased cholesterol in the trans- Golgi network (TGN) during the following hour, and superseded by Golgi fragmentation, impaired glycosylation, and selective degradation of TGN proteins by ~4 h. The TGN disintegration results from its acute deacidification caused by disassembly of the Golgi V-ATPase. Mechanistically, Sac1 mediated TGN membrane composition maintains an assembly-promoting conformation of the V 0 a2 subunit. Key phenotypes of acute Sac1 degradation are recapitulated in human differentiated trophoblasts, causing processing defects of chorionic gonadotropin, in line with loss-of-function intolerance of the human SACM1L gene. Collectively, our findings reveal that the assembly of the Golgi V-ATPase is controlled by the TGN membrane via Sac1 fuelled lipid exchange.

Article Details

Volume / Issue Vol. 16, Issue 1
Published August 21, 2025
ISSN 2041-1723
Publisher Nature Portfolio

Journal Info

Nature Communications

Nature Portfolio

ISSN: 2041-1723 Open Access Life Sciences

Authors (15)

X

Xin Zhou

M

Miesje M. van der Stoel

S

Shreyas Kaptan

H

Haoran Li

Zhejiang University , , 866 Yuhangtang Rd , ,

S

Shiqian Li

Center for Artificial Intelligence Chips, Institute of Artificial Intelligence, Peking University, Beijing, China.

M

Maarit Hölttä

H

Helena Vihinen

E

Eija Jokitalo

C

Christoph Thiele

O

Olli Pietiläinen

S

Shin Morioka

Department of Biochemical Pathophysiology, Medical Research Laboratory, Institute of Integrated Research, Institute of Science Tokyo

J

Junko Sasaki

Department of Biochemical Pathophysiology, Medical Research Laboratory, Institute of Integrated Research, Institute of Science Tokyo

T

Takehiko Sasaki

Department of Biochemical Pathophysiology, Medical Research Laboratory, Institute of Integrated Research, Institute of Science Tokyo

I

Ilpo Vattulainen

Department of Physics, University of Helsinki

E

Elina Ikonen