Concordance of response-based clinical trial and machine learning–generated real-world end points.

Q Qianyi Zhang (State Key Laboratory of Metal Matrix Composites School of Materials Science and Engineering Shanghai Jiao Tong University Shanghai P. R. China) K Konstantin Krismer (Flatiron Health, New York, NY) Y Yichen Lu Q Qianyu Yuan (Flatiron Health, New York, NY) A Aaron Dolor (Flatiron Health, New York, NY) A Auriane Blarre (Flatiron Health, New York, NY) A Aaron B. Cohen (Flatiron Health, New York, NY) T Tori Williams (Flatiron Health, New York, NY) S Sophia Maund (Genentech, Inc., South San Francisco, CA) M Minu K Srivastava (Genentech, Inc., South San Francisco, CA) K Kelly Magee (Flatiron Health, New York, NY)

Abstract

e13625 Background: Real-world evidence (RWE) is increasingly used to complement clinical trial data in oncology, providing rapid insights to inform study design and drug development. Using deep learning, natural language processing (NLP)-based machine learning models, we developed a real-world response (rwR) approach.This study evaluates the concordance between clinical trial and real-world (rw) end points in patients with stage IV non–small cell lung cancer (NSCLC) treated with first-line platinum plus pemetrexed chemotherapy. Methods: This retrospective study compared response-based outcomes generated from patients included in the control arm of IMpower132 with a trial-aligned cohort of rw patients selected from the US-nationwide Flatiron Health electronic health record (EHR)-derived deidentified database. Rw patients were aligned to key trial inclusion/exclusion criteria and further adjusted using propensity score weighting on selected baseline characteristics including demographics (eg, age, race) and clinical factors (eg, Eastern Cooperative Oncology Group [ECOG] performance status, metastatic sites). rwR was generated using NLP-based machine learning models trained on expert human-abstracted data (training set N ~12 000 patients) to extract clinician-documented change in disease burden (ie, complete response, partial response, stable disease, progressive disease, unknown) at each imaging-based disease assessment timepoint. Trial response data were captured according to a RECIST-based trial protocol. End points included response rates (rwRR vs objective response rate [ORR]), duration of response (rwDOR vs DOR), and progression-free survival (rwPFS vs PFS). Concordance was evaluated using logistic regression for response rates and Cox regression for DOR and PFS. Results: The rw cohort (N = 494) was well aligned with the clinical trial cohort (N = 275) after weighting, with standardized mean differences below 0.1 across all selected baseline characteristics. The rwRR was 34%, compared with the 38% ORR observed in the trial cohort (OR, 0.83 [95% CI, 0.54-1.27]). The median rwDOR was 5.7 months (95% CI, 4.3-7.7), compared with 6.9 months (95% CI, 4.5-8.3) for DOR in the trial cohort (HR, 1.18 [95% CI, 0.86-1.62]). rwPFS was 5.5 months (95% CI, 4.5-7.1), closely aligned with the 5.4 months (95% CI, 4.3-5.7) observed in the trial cohort (HR, 0.96 [95% CI, 0.79-1.16]). Conclusions: NLP-based ML models enable scalable and reliable generation of response-based end points from EHRs. Concordance between trial and rw end points highlights the utility of ML-driven approaches to advance RWE in oncology, particularly when leveraging large-scale, clinically rich, and well-curated training datasets.

Article Details

Volume / Issue Vol. 43, Issue 16_suppl
Published June 01, 2025
ISSN 0732-183X
Publisher Lippincott Williams & Wilkins

Journal Info

Journal of Clinical Oncology

Lippincott Williams & Wilkins

ISSN: 0732-183X Health Sciences

Authors (11)

Q

Qianyi Zhang

State Key Laboratory of Metal Matrix Composites School of Materials Science and Engineering Shanghai Jiao Tong University Shanghai P. R. China

K

Konstantin Krismer

Flatiron Health, New York, NY

Y

Yichen Lu

Q

Qianyu Yuan

Flatiron Health, New York, NY

A

Aaron Dolor

Flatiron Health, New York, NY

A

Auriane Blarre

Flatiron Health, New York, NY

A

Aaron B. Cohen

Flatiron Health, New York, NY

T

Tori Williams

Flatiron Health, New York, NY

S

Sophia Maund

Genentech, Inc., South San Francisco, CA

M

Minu K Srivastava

Genentech, Inc., South San Francisco, CA

K

Kelly Magee

Flatiron Health, New York, NY