Combinatorial decision-making driven by multicomponent surface condensates
Abstract
Living organisms rely on molecular networks, such as gene circuits and signaling pathways, for information processing and robust decision-making in crowded, noisy environments. Recent advances show that interacting biomolecules self-organize by phase transitions into coexisting spatial compartments called condensates, often on cellular surfaces such as chromatin and membranes. In this paper, we demonstrate that multicomponent fluids can be designed to recruit distinct condensates to surfaces with differing compositions, performing a form of surface classification by condensation. We draw an analogy to multidimensional classification in machine learning and explore how hidden species, analogous to hidden nodes, expand the expressivity and capacity of these interacting ensembles to facilitate complex decision boundaries. By simply changing levels of individual species, we find that the same molecular repertoire can be reprogrammed to solve new tasks. Together, our findings suggest that the physical processes underlying biomolecular condensates can encode and drive adaptive information processing beyond compartmentalization.
Article Details
Journal Info
Proceedings of the National Academy of Sciences
National Academy of Sciences
Authors (7)
Aidan Zentner
School of Engineering and Applied Sciences, Harvard University
Ethan V. Halingstad
Department of Chemical and Biological Engineering, Northwestern University
Cameron Chalk
Computation and Neural Systems, California Institute of Technology
Michael P. Brenner
Arvind Murugan
Department of Physics
Erik Winfree
Computation and Neural Systems, California Institute of Technology
Krishna Shrinivas
Department of Chemical and Biological Engineering, Northwestern University