Circular RNA circFat3 as a biomarker for construction of postmortem interval Estimation models in mouse brain tissues at multiple temperatures

Abstract

Abstract Circular RNAs (circRNAs) are conserved, abundant, stable, and specifically expressed in mammals. The postmortem interval (PMI) estimation is crucial in forensic medicine, particularly for case investigation and civil action. CircRNAs may serve as ideal PMI biomarkers. However, no research has explored PMI estimation in the brain using circRNAs. The total RNA, including circRNA, was sampled from mouse brain tissues at multiple temperatures (4℃, 25℃, and 35℃). The semi-quantitative reverse transcription (RT)-PCR and real-time quantitative PCR (RT-qPCR) were used to test the postmortem degradation levels at different PMIs. As a result, we found circFat3 is highly and specifically expressed in mouse brain tissue, with postmortem levels significantly correlated with PMI across multiple temperatures. In addition, mt-co1 and 28 S rRNA demonstrated stability under various temperature conditions, supporting their use as reliable reference genes for PMI models. Moreover, the error rates showed that the circFat3/28S rRNA model was more accurate at 4℃. The circFat3/mt-co1 and circFat3/28S rRNA models provided slightly better predictions for short-term and long-term PMI, respectively at 25℃, while the circFat3/mt-co1 model was more accurate at 35℃. The combined application of the two reference genes was beneficial primarily for long-term PMI estimation. Furthermore, the validation results confirmed that these models were more accurate for long-term PMI estimation. Thus, our mathematical models were constructed at multiple temperatures based on circFat3 and these two reference genes. Taken together, this is the first study to identify circRNA circFat3 as a novel biomarker that may serve as a complementary tool for PMI estimation.