Chiral packings in cylinders are ultrasensitive to confinement deformation

Abstract

Abstract Sphere packings in circular cylinders have attracted substantial research interest, among which the discovery of chiral helical structures is the most iconic. However, recent experimental results on zebrafish do not match the known packing structures in circular cylinders. To account for the inherent imperfections of biological tubes, we take elliptic cylinders as the canonical deformation of circular cylinders and investigate the densest packings of hard spheres in them using simulation, theory, and experiments. Starting from the chiral structures in circular cylinders, we demonstrate that even a weak cross-sectional deformation can trigger entirely new phases, including ones that either eliminate global chirality or significantly complicate the chiral structures. This reveals the significant effect of cylindrical anisotropy. The new helical phases under anisotropic confinement remain chiral and develop hierarchical periodic structures, which are difficult to obtain by simulations but are predicted by our newly developed theory for helical phases in elliptic cylinders. The theory also predicts double oscillated-chain phases without chirality, which perfectly match the simulations. Our work offers fresh insights into understanding packings in anisotropic cylinders, which will help researchers to design new materials and to understand many living systems.